Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00135 and ABZR86_RS00140 are separated by 29 nucleotides ABZR86_RS00140 and ABZR86_RS00145 are separated by 282 nucleotides ABZR86_RS00145 and ABZR86_RS00150 are separated by 61 nucleotides ABZR86_RS00150 and ABZR86_RS00155 are separated by 34 nucleotides
ABZR86_RS00135: ABZR86_RS00135 - DUF899 family protein, at 26,392 to 27,096
_RS00135
ABZR86_RS00140: ABZR86_RS00140 - glutathione S-transferase family protein, at 27,126 to 27,785
_RS00140
ABZR86_RS00145: ABZR86_RS00145 - MarR family transcriptional regulator, at 28,068 to 28,535
_RS00145
ABZR86_RS00150: ABZR86_RS00150 - isochorismatase family protein, at 28,597 to 29,154
_RS00150
ABZR86_RS00155: ABZR86_RS00155 - MFS transporter, at 29,189 to 30,475
_RS00155
Position (kb) 28
29 Strain fitness (log2 ratio) -2
-1
0
1 at 27.166 kb on + strand at 27.166 kb on + strand at 27.166 kb on + strand at 27.278 kb on - strand, within ABZR86_RS00140 at 27.278 kb on - strand, within ABZR86_RS00140 at 27.278 kb on - strand, within ABZR86_RS00140 at 27.370 kb on + strand, within ABZR86_RS00140 at 27.475 kb on + strand, within ABZR86_RS00140 at 27.475 kb on + strand, within ABZR86_RS00140 at 27.475 kb on + strand, within ABZR86_RS00140 at 27.475 kb on + strand, within ABZR86_RS00140 at 27.476 kb on - strand, within ABZR86_RS00140 at 27.476 kb on - strand, within ABZR86_RS00140 at 27.476 kb on - strand, within ABZR86_RS00140 at 27.476 kb on - strand, within ABZR86_RS00140 at 27.571 kb on + strand, within ABZR86_RS00140 at 27.572 kb on - strand, within ABZR86_RS00140 at 27.748 kb on + strand at 27.748 kb on + strand at 27.769 kb on + strand at 27.901 kb on + strand at 27.932 kb on - strand at 28.017 kb on + strand at 28.018 kb on - strand at 28.048 kb on - strand at 28.672 kb on - strand, within ABZR86_RS00150 at 29.193 kb on + strand at 29.193 kb on + strand at 29.219 kb on + strand at 29.220 kb on - strand at 29.220 kb on - strand at 29.225 kb on + strand at 29.226 kb on - strand at 29.226 kb on - strand at 29.516 kb on + strand, within ABZR86_RS00155 at 29.516 kb on + strand, within ABZR86_RS00155 at 29.516 kb on + strand, within ABZR86_RS00155 at 29.516 kb on + strand, within ABZR86_RS00155 at 29.516 kb on + strand, within ABZR86_RS00155 at 29.516 kb on + strand, within ABZR86_RS00155 at 29.517 kb on - strand, within ABZR86_RS00155 at 29.517 kb on - strand, within ABZR86_RS00155
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 27,166 + -0.4 27,166 + +0.5 27,166 + +0.3 27,278 - ABZR86_RS00140 0.23 +0.4 27,278 - ABZR86_RS00140 0.23 -1.1 27,278 - ABZR86_RS00140 0.23 +0.1 27,370 + ABZR86_RS00140 0.37 -1.3 27,475 + ABZR86_RS00140 0.53 +0.2 27,475 + ABZR86_RS00140 0.53 -0.5 27,475 + ABZR86_RS00140 0.53 +0.5 27,475 + ABZR86_RS00140 0.53 -0.1 27,476 - ABZR86_RS00140 0.53 +0.6 27,476 - ABZR86_RS00140 0.53 -0.2 27,476 - ABZR86_RS00140 0.53 -0.5 27,476 - ABZR86_RS00140 0.53 -0.3 27,571 + ABZR86_RS00140 0.67 +0.2 27,572 - ABZR86_RS00140 0.68 +0.3 27,748 + +0.4 27,748 + +0.4 27,769 + -0.0 27,901 + -1.0 27,932 - -0.2 28,017 + -0.6 28,018 - +0.3 28,048 - -0.2 28,672 - ABZR86_RS00150 0.13 +0.5 29,193 + +0.1 29,193 + -0.6 29,219 + +0.3 29,220 - +0.1 29,220 - -0.4 29,225 + +0.6 29,226 - -0.8 29,226 - +0.7 29,516 + ABZR86_RS00155 0.25 +0.5 29,516 + ABZR86_RS00155 0.25 -2.6 29,516 + ABZR86_RS00155 0.25 +0.3 29,516 + ABZR86_RS00155 0.25 +1.3 29,516 + ABZR86_RS00155 0.25 -0.3 29,516 + ABZR86_RS00155 0.25 +1.1 29,517 - ABZR86_RS00155 0.25 +0.7 29,517 - ABZR86_RS00155 0.25 +1.0
Or see this region's nucleotide sequence