Experiment: Hyaluronic from Streptococcus equi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4023 and BT4024 overlap by 4 nucleotides BT4024 and BT4025 are separated by 21 nucleotides BT4025 and BT4026 overlap by 4 nucleotides BT4026 and BT4027 are separated by 26 nucleotides BT4027 and BT4028 overlap by 4 nucleotides BT4028 and BT4029 are separated by 143 nucleotides
BT4023: BT4023 - transposase (NCBI ptt file), at 5,240,134 to 5,240,490
BT4023
BT4024: BT4024 - hypothetical protein (NCBI ptt file), at 5,240,487 to 5,240,747
BT4024
BT4025: BT4025 - hypothetical protein (NCBI ptt file), at 5,240,769 to 5,241,065
BT4025
BT4026: BT4026 - conserved hypothetical protein (NCBI ptt file), at 5,241,062 to 5,242,060
BT4026
BT4027: BT4027 - hypothetical protein (NCBI ptt file), at 5,242,087 to 5,242,314
BT4027
BT4028: BT4028 - hypothetical protein (NCBI ptt file), at 5,242,311 to 5,242,583
BT4028
BT4029: BT4029 - hypothetical protein (NCBI ptt file), at 5,242,727 to 5,243,467
BT4029
Position (kb) 5241
5242
5243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5240.194 kb on - strand, within BT4023 at 5240.202 kb on - strand, within BT4023 at 5240.223 kb on - strand, within BT4023 at 5240.236 kb on - strand, within BT4023 at 5240.266 kb on - strand, within BT4023 at 5240.266 kb on - strand, within BT4023 at 5240.268 kb on - strand, within BT4023 at 5240.356 kb on - strand, within BT4023 at 5240.554 kb on - strand, within BT4024 at 5240.619 kb on - strand, within BT4024 at 5240.666 kb on - strand, within BT4024 at 5240.666 kb on - strand, within BT4024 at 5240.717 kb on - strand, within BT4024 at 5240.728 kb on - strand at 5240.743 kb on - strand at 5240.753 kb on - strand at 5240.763 kb on - strand at 5240.922 kb on - strand, within BT4025 at 5240.986 kb on - strand, within BT4025 at 5241.034 kb on - strand, within BT4025 at 5241.067 kb on + strand at 5241.068 kb on - strand at 5241.086 kb on + strand at 5241.123 kb on + strand at 5241.124 kb on - strand at 5241.158 kb on + strand at 5241.167 kb on + strand, within BT4026 at 5241.209 kb on + strand, within BT4026 at 5241.210 kb on - strand, within BT4026 at 5241.345 kb on + strand, within BT4026 at 5241.345 kb on + strand, within BT4026 at 5241.415 kb on - strand, within BT4026 at 5241.436 kb on - strand, within BT4026 at 5241.512 kb on - strand, within BT4026 at 5241.655 kb on + strand, within BT4026 at 5241.715 kb on + strand, within BT4026 at 5241.716 kb on - strand, within BT4026 at 5241.721 kb on - strand, within BT4026 at 5241.737 kb on - strand, within BT4026 at 5241.886 kb on - strand, within BT4026 at 5241.931 kb on + strand, within BT4026 at 5241.931 kb on + strand, within BT4026 at 5241.978 kb on + strand at 5242.098 kb on + strand at 5242.117 kb on + strand, within BT4027 at 5242.118 kb on - strand, within BT4027 at 5242.138 kb on - strand, within BT4027 at 5242.139 kb on + strand, within BT4027 at 5242.140 kb on - strand, within BT4027 at 5242.423 kb on - strand, within BT4028 at 5242.582 kb on - strand at 5242.615 kb on + strand at 5242.739 kb on - strand at 5242.760 kb on - strand at 5242.821 kb on - strand, within BT4029
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi remove 5,240,194 - BT4023 0.17 -0.7 5,240,202 - BT4023 0.19 -1.9 5,240,223 - BT4023 0.25 -2.1 5,240,236 - BT4023 0.29 +0.6 5,240,266 - BT4023 0.37 -0.0 5,240,266 - BT4023 0.37 -1.5 5,240,268 - BT4023 0.38 -1.1 5,240,356 - BT4023 0.62 +0.3 5,240,554 - BT4024 0.26 -1.0 5,240,619 - BT4024 0.51 -3.1 5,240,666 - BT4024 0.69 -1.0 5,240,666 - BT4024 0.69 -3.9 5,240,717 - BT4024 0.88 -3.7 5,240,728 - -1.6 5,240,743 - -1.4 5,240,753 - +0.6 5,240,763 - +0.2 5,240,922 - BT4025 0.52 +0.3 5,240,986 - BT4025 0.73 -1.2 5,241,034 - BT4025 0.89 -1.7 5,241,067 + -0.0 5,241,068 - -0.7 5,241,086 + -0.4 5,241,123 + -1.7 5,241,124 - -2.1 5,241,158 + -1.7 5,241,167 + BT4026 0.11 -2.5 5,241,209 + BT4026 0.15 +0.8 5,241,210 - BT4026 0.15 -2.2 5,241,345 + BT4026 0.28 -1.0 5,241,345 + BT4026 0.28 -1.6 5,241,415 - BT4026 0.35 -1.2 5,241,436 - BT4026 0.37 +0.3 5,241,512 - BT4026 0.45 +1.6 5,241,655 + BT4026 0.59 +1.4 5,241,715 + BT4026 0.65 -2.0 5,241,716 - BT4026 0.65 -1.5 5,241,721 - BT4026 0.66 -1.4 5,241,737 - BT4026 0.68 +0.4 5,241,886 - BT4026 0.82 -0.7 5,241,931 + BT4026 0.87 +1.0 5,241,931 + BT4026 0.87 +0.8 5,241,978 + +1.6 5,242,098 + +0.6 5,242,117 + BT4027 0.13 -2.1 5,242,118 - BT4027 0.14 -1.6 5,242,138 - BT4027 0.22 -1.2 5,242,139 + BT4027 0.23 -0.0 5,242,140 - BT4027 0.23 +0.3 5,242,423 - BT4028 0.41 -2.5 5,242,582 - -1.3 5,242,615 + -1.6 5,242,739 - -1.2 5,242,760 - -1.7 5,242,821 - BT4029 0.13 -1.6
Or see this region's nucleotide sequence