Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2814

Experiment: Hyaluronic from Streptococcus equi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2813 and BT2814 are separated by 24 nucleotidesBT2814 and BT2815 are separated by 148 nucleotidesBT2815 and BT2816 are separated by 291 nucleotides BT2813: BT2813 - sodium-dependent multivitamin transporter (NCBI ptt file), at 3,494,224 to 3,495,693 BT2813 BT2814: BT2814 - dihydrodipicolinate synthase (NCBI ptt file), at 3,495,718 to 3,496,647 BT2814 BT2815: BT2815 - putative mutT family protein (NCBI ptt file), at 3,496,796 to 3,497,320 BT2815 BT2816: BT2816 - TPR-domain containing protein (NCBI ptt file), at 3,497,612 to 3,500,623 BT2816 Position (kb) 3495 3496 3497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3494.750 kb on - strand, within BT2813at 3494.759 kb on + strand, within BT2813at 3494.816 kb on + strand, within BT2813at 3494.817 kb on - strand, within BT2813at 3494.825 kb on + strand, within BT2813at 3494.825 kb on + strand, within BT2813at 3494.826 kb on - strand, within BT2813at 3494.826 kb on - strand, within BT2813at 3494.826 kb on - strand, within BT2813at 3494.839 kb on + strand, within BT2813at 3494.840 kb on - strand, within BT2813at 3494.840 kb on - strand, within BT2813at 3494.840 kb on - strand, within BT2813at 3494.840 kb on - strand, within BT2813at 3494.901 kb on + strand, within BT2813at 3494.942 kb on + strand, within BT2813at 3494.943 kb on - strand, within BT2813at 3494.955 kb on + strand, within BT2813at 3494.969 kb on - strand, within BT2813at 3494.977 kb on - strand, within BT2813at 3494.981 kb on - strand, within BT2813at 3494.992 kb on - strand, within BT2813at 3495.061 kb on - strand, within BT2813at 3495.244 kb on - strand, within BT2813at 3495.244 kb on - strand, within BT2813at 3495.271 kb on - strand, within BT2813at 3495.288 kb on - strand, within BT2813at 3495.295 kb on - strand, within BT2813at 3495.343 kb on + strand, within BT2813at 3495.344 kb on - strand, within BT2813at 3495.344 kb on - strand, within BT2813at 3495.344 kb on - strand, within BT2813at 3495.383 kb on + strand, within BT2813at 3495.410 kb on + strand, within BT2813at 3495.411 kb on - strand, within BT2813at 3495.425 kb on + strand, within BT2813at 3495.425 kb on + strand, within BT2813at 3495.426 kb on - strand, within BT2813at 3495.429 kb on + strand, within BT2813at 3495.492 kb on + strand, within BT2813at 3495.493 kb on - strand, within BT2813at 3495.493 kb on - strand, within BT2813at 3495.494 kb on + strand, within BT2813at 3495.495 kb on - strand, within BT2813at 3495.518 kb on + strand, within BT2813at 3495.533 kb on - strand, within BT2813at 3495.537 kb on - strand, within BT2813at 3495.537 kb on - strand, within BT2813at 3495.537 kb on - strand, within BT2813at 3495.587 kb on + strandat 3495.672 kb on + strandat 3495.673 kb on - strandat 3495.687 kb on + strandat 3495.693 kb on + strandat 3495.694 kb on - strandat 3495.793 kb on - strandat 3495.823 kb on + strand, within BT2814at 3495.889 kb on - strand, within BT2814at 3495.890 kb on + strand, within BT2814at 3495.890 kb on + strand, within BT2814at 3495.892 kb on + strand, within BT2814at 3495.892 kb on + strand, within BT2814at 3495.893 kb on - strand, within BT2814at 3495.898 kb on - strand, within BT2814at 3495.996 kb on + strand, within BT2814at 3496.090 kb on - strand, within BT2814at 3496.104 kb on - strand, within BT2814at 3496.104 kb on - strand, within BT2814at 3496.213 kb on - strand, within BT2814at 3496.224 kb on + strand, within BT2814at 3496.225 kb on - strand, within BT2814at 3496.227 kb on + strand, within BT2814at 3496.230 kb on - strand, within BT2814at 3496.244 kb on - strand, within BT2814at 3496.310 kb on + strand, within BT2814at 3496.310 kb on + strand, within BT2814at 3496.399 kb on - strand, within BT2814at 3496.402 kb on + strand, within BT2814at 3496.403 kb on - strand, within BT2814at 3496.432 kb on - strand, within BT2814at 3496.519 kb on + strand, within BT2814at 3496.520 kb on - strand, within BT2814at 3496.612 kb on - strandat 3496.612 kb on - strandat 3496.647 kb on + strandat 3496.682 kb on + strandat 3496.682 kb on + strandat 3496.682 kb on + strandat 3496.688 kb on + strandat 3496.688 kb on + strandat 3496.691 kb on + strandat 3496.692 kb on - strandat 3496.692 kb on - strandat 3496.708 kb on + strandat 3496.754 kb on + strandat 3496.780 kb on + strandat 3496.783 kb on - strandat 3496.823 kb on + strandat 3496.904 kb on + strand, within BT2815at 3497.065 kb on - strand, within BT2815at 3497.102 kb on + strand, within BT2815at 3497.126 kb on + strand, within BT2815at 3497.127 kb on - strand, within BT2815at 3497.129 kb on - strand, within BT2815at 3497.152 kb on + strand, within BT2815at 3497.181 kb on + strand, within BT2815at 3497.295 kb on + strandat 3497.318 kb on + strandat 3497.387 kb on - strandat 3497.387 kb on - strandat 3497.407 kb on + strandat 3497.407 kb on + strandat 3497.408 kb on - strandat 3497.414 kb on - strandat 3497.449 kb on - strandat 3497.452 kb on + strandat 3497.453 kb on - strandat 3497.491 kb on - strandat 3497.495 kb on - strandat 3497.581 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi
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3,494,750 - BT2813 0.36 -1.6
3,494,759 + BT2813 0.36 -1.4
3,494,816 + BT2813 0.40 -2.3
3,494,817 - BT2813 0.40 -0.8
3,494,825 + BT2813 0.41 -2.3
3,494,825 + BT2813 0.41 +0.5
3,494,826 - BT2813 0.41 -3.5
3,494,826 - BT2813 0.41 -1.1
3,494,826 - BT2813 0.41 -2.4
3,494,839 + BT2813 0.42 -0.8
3,494,840 - BT2813 0.42 -0.8
3,494,840 - BT2813 0.42 -0.0
3,494,840 - BT2813 0.42 -0.8
3,494,840 - BT2813 0.42 -1.0
3,494,901 + BT2813 0.46 +0.5
3,494,942 + BT2813 0.49 -1.1
3,494,943 - BT2813 0.49 -2.3
3,494,955 + BT2813 0.50 -0.9
3,494,969 - BT2813 0.51 -0.2
3,494,977 - BT2813 0.51 -0.6
3,494,981 - BT2813 0.51 -1.3
3,494,992 - BT2813 0.52 -1.9
3,495,061 - BT2813 0.57 -2.5
3,495,244 - BT2813 0.69 -1.2
3,495,244 - BT2813 0.69 -2.3
3,495,271 - BT2813 0.71 -2.2
3,495,288 - BT2813 0.72 -2.0
3,495,295 - BT2813 0.73 -0.0
3,495,343 + BT2813 0.76 -0.3
3,495,344 - BT2813 0.76 -1.6
3,495,344 - BT2813 0.76 -2.4
3,495,344 - BT2813 0.76 -0.8
3,495,383 + BT2813 0.79 -1.4
3,495,410 + BT2813 0.81 -1.3
3,495,411 - BT2813 0.81 -0.0
3,495,425 + BT2813 0.82 +0.5
3,495,425 + BT2813 0.82 -2.3
3,495,426 - BT2813 0.82 -1.6
3,495,429 + BT2813 0.82 +0.5
3,495,492 + BT2813 0.86 +0.5
3,495,493 - BT2813 0.86 -1.6
3,495,493 - BT2813 0.86 -1.4
3,495,494 + BT2813 0.86 -2.2
3,495,495 - BT2813 0.86 -1.5
3,495,518 + BT2813 0.88 -0.0
3,495,533 - BT2813 0.89 -0.0
3,495,537 - BT2813 0.89 -0.3
3,495,537 - BT2813 0.89 +0.3
3,495,537 - BT2813 0.89 -1.0
3,495,587 + -1.4
3,495,672 + -2.8
3,495,673 - -1.6
3,495,687 + -2.4
3,495,693 + +1.9
3,495,694 - -1.5
3,495,793 - -1.3
3,495,823 + BT2814 0.11 -1.2
3,495,889 - BT2814 0.18 -0.5
3,495,890 + BT2814 0.18 -1.3
3,495,890 + BT2814 0.18 -1.6
3,495,892 + BT2814 0.19 -0.5
3,495,892 + BT2814 0.19 -1.8
3,495,893 - BT2814 0.19 +0.1
3,495,898 - BT2814 0.19 -2.0
3,495,996 + BT2814 0.30 +0.5
3,496,090 - BT2814 0.40 -0.0
3,496,104 - BT2814 0.42 -1.5
3,496,104 - BT2814 0.42 -0.4
3,496,213 - BT2814 0.53 -1.5
3,496,224 + BT2814 0.54 -1.8
3,496,225 - BT2814 0.55 -1.0
3,496,227 + BT2814 0.55 -2.4
3,496,230 - BT2814 0.55 -2.3
3,496,244 - BT2814 0.57 -1.0
3,496,310 + BT2814 0.64 -1.6
3,496,310 + BT2814 0.64 -1.6
3,496,399 - BT2814 0.73 -0.8
3,496,402 + BT2814 0.74 -1.8
3,496,403 - BT2814 0.74 +1.5
3,496,432 - BT2814 0.77 -1.3
3,496,519 + BT2814 0.86 -4.1
3,496,520 - BT2814 0.86 -0.0
3,496,612 - -2.3
3,496,612 - -2.5
3,496,647 + -0.5
3,496,682 + +0.5
3,496,682 + -1.8
3,496,682 + -0.0
3,496,688 + -0.5
3,496,688 + -2.0
3,496,691 + -0.4
3,496,692 - -0.5
3,496,692 - -0.4
3,496,708 + -1.9
3,496,754 + -1.6
3,496,780 + -0.8
3,496,783 - -1.3
3,496,823 + -1.4
3,496,904 + BT2815 0.21 -2.5
3,497,065 - BT2815 0.51 -0.3
3,497,102 + BT2815 0.58 -0.0
3,497,126 + BT2815 0.63 -0.0
3,497,127 - BT2815 0.63 -1.3
3,497,129 - BT2815 0.63 -3.0
3,497,152 + BT2815 0.68 -3.5
3,497,181 + BT2815 0.73 -2.0
3,497,295 + -1.3
3,497,318 + +0.0
3,497,387 - -1.5
3,497,387 - -2.8
3,497,407 + -1.5
3,497,407 + -1.1
3,497,408 - -0.0
3,497,414 - -2.8
3,497,449 - -1.9
3,497,452 + -0.8
3,497,453 - +1.0
3,497,491 - -0.0
3,497,495 - -2.6
3,497,581 + -1.5

Or see this region's nucleotide sequence