Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2655

Experiment: Hyaluronic from Streptococcus equi

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Hyaluronic from Streptococcus equi
3,305,629	-		BT2654	0.25	-2.9
3,305,629	-		BT2654	0.25	-1.2
3,305,635	+		BT2654	0.25	-1.6
3,305,686	+		BT2654	0.29	-1.0
3,305,687	-		BT2654	0.29	-2.6
3,305,688	+		BT2654	0.30	-2.2
3,305,741	+		BT2654	0.34	-1.6
3,305,741	+		BT2654	0.34	+0.2
3,305,771	-		BT2654	0.36	-1.9
3,305,797	-		BT2654	0.39	-1.9
3,305,797	-		BT2654	0.39	-1.2
3,305,826	+		BT2654	0.41	-3.2
3,305,867	+		BT2654	0.44	-2.1
3,305,868	-		BT2654	0.44	+2.2
3,305,868	-		BT2654	0.44	-1.7
3,305,870	+		BT2654	0.45	-1.6
3,305,870	+		BT2654	0.45	-1.8
3,305,870	+		BT2654	0.45	-0.7
3,305,871	-		BT2654	0.45	-2.0
3,305,872	+		BT2654	0.45	+0.6
3,305,873	-		BT2654	0.45	-1.0
3,305,873	-		BT2654	0.45	-1.5
3,305,946	-		BT2654	0.51	-0.7
3,305,946	-		BT2654	0.51	-2.1
3,305,952	-		BT2654	0.51	+1.8
3,305,952	-		BT2654	0.51	+0.6
3,305,986	-		BT2654	0.54	-0.7
3,305,986	-		BT2654	0.54	+0.6
3,305,986	-		BT2654	0.54	-2.2
3,305,986	-		BT2654	0.54	-0.7
3,306,009	+		BT2654	0.56	-1.9
3,306,040	+		BT2654	0.59	+0.2
3,306,077	+		BT2654	0.62	-0.7
3,306,110	+		BT2654	0.64	-1.4
3,306,160	+		BT2654	0.68	-1.8
3,306,185	-		BT2654	0.71	-2.1
3,306,223	+		BT2654	0.74	-1.7
3,306,224	-		BT2654	0.74	-1.0
3,306,229	+		BT2654	0.74	-1.0
3,306,230	-		BT2654	0.74	-1.2
3,306,231	+		BT2654	0.74	+0.8
3,306,232	-		BT2654	0.74	-2.0
3,306,242	+		BT2654	0.75	-0.2
3,306,249	+		BT2654	0.76	-4.0
3,306,250	-		BT2654	0.76	-2.0
3,306,250	-		BT2654	0.76	-1.3
3,306,253	+		BT2654	0.76	-2.4
3,306,271	+		BT2654	0.78	-1.5
3,306,317	-		BT2654	0.81	+0.4
3,306,330	+		BT2654	0.83	+0.6
3,306,333	+		BT2654	0.83	-1.4
3,306,334	-		BT2654	0.83	-2.2
3,306,334	-		BT2654	0.83	+0.5
3,306,364	-		BT2654	0.85	-0.9
3,306,364	-		BT2654	0.85	-0.4
3,306,371	+		BT2654	0.86	-4.8
3,306,371	+		BT2654	0.86	-2.9
3,306,372	-		BT2654	0.86	-1.0
3,306,372	-		BT2654	0.86	-1.6
3,306,372	-		BT2654	0.86	-1.6
3,306,421	+				-0.7
3,306,421	+				-1.6
3,306,433	+				-2.0
3,306,473	-				-1.6
3,306,476	+				-1.2
3,306,480	+				-0.0
3,306,520	+				-1.7
3,306,520	+				+1.2
3,306,521	-				-2.0
3,306,521	-				-3.3
3,306,521	-				-0.0
3,306,543	-				-0.7
3,306,586	+				-0.0
3,306,600	+				-0.1
3,306,600	+				-1.0
3,306,601	-				+0.6
3,306,612	-				-1.4
3,306,612	-				-0.9
3,306,616	-				-1.6
3,306,616	-				+0.2
3,306,616	-				-0.2
3,306,621	+				-1.0
3,306,622	-				-1.1
3,306,644	-				-1.2
3,306,644	-				-2.4
3,306,699	+				-1.4
3,306,742	-				-0.2
3,306,745	+				-2.0
3,306,745	+				-1.0
3,306,746	-				+0.1
3,306,746	-				-0.4
3,306,760	+				-1.2
3,306,764	-				+0.6
3,306,793	-				-0.4
3,306,794	+				-0.7
3,306,794	+				-2.8
3,306,794	+				-0.5
3,306,794	+				+1.0
3,306,795	-				-0.8
3,306,810	+				-4.2
3,306,810	+				-1.3
3,306,815	-				-1.7
3,306,815	-				-2.0
3,306,815	-				-2.8
3,306,832	-				-1.4
3,306,880	+				-0.7
3,306,917	-				-1.0
3,306,917	-				-2.3
3,306,935	+				-2.5
3,306,936	-				-1.4
3,306,936	-				-4.2
3,306,936	-				-1.5
3,306,938	-				-0.7
3,306,940	-				-1.9
3,306,940	-				-2.0
3,306,953	-		BT2655	0.10	-1.7
3,306,956	+		BT2655	0.10	-3.8
3,306,957	-		BT2655	0.10	-1.2
3,307,055	-		BT2655	0.13	-2.0
3,307,059	-		BT2655	0.14	-1.0
3,307,059	-		BT2655	0.14	-1.4
3,307,059	-		BT2655	0.14	-2.6
3,307,059	-		BT2655	0.14	-3.5
3,307,060	+		BT2655	0.14	-1.7
3,307,061	-		BT2655	0.14	-2.4
3,307,061	-		BT2655	0.14	-0.8
3,307,061	-		BT2655	0.14	-1.3
3,307,075	+		BT2655	0.14	-0.0
3,307,076	-		BT2655	0.14	-3.5
3,307,076	-		BT2655	0.14	-1.2
3,307,080	+		BT2655	0.14	-2.0
3,307,093	+		BT2655	0.15	-0.7
3,307,160	+		BT2655	0.17	-1.2
3,307,178	+		BT2655	0.17	-0.4
3,307,179	-		BT2655	0.17	-3.6
3,307,179	-		BT2655	0.17	-1.0
3,307,179	-		BT2655	0.17	-2.8
3,307,181	-		BT2655	0.17	+0.6
3,307,199	+		BT2655	0.18	-2.8
3,307,200	-		BT2655	0.18	-0.6
3,307,205	-		BT2655	0.18	-1.6
3,307,207	-		BT2655	0.18	-1.7
3,307,215	+		BT2655	0.18	-1.4
3,307,249	+		BT2655	0.19	-1.2
3,307,270	+		BT2655	0.20	+0.6
3,307,270	+		BT2655	0.20	-1.4
3,307,271	-		BT2655	0.20	-1.8
3,307,304	-		BT2655	0.21	-1.6
3,307,306	+		BT2655	0.21	-0.7
3,307,481	-		BT2655	0.27	-0.7
3,307,493	-		BT2655	0.27	-2.4
3,307,559	+		BT2655	0.29	-1.0
3,307,560	-		BT2655	0.29	-2.9
3,307,560	-		BT2655	0.29	-2.1
3,307,560	-		BT2655	0.29	-1.4
3,307,561	+		BT2655	0.29	-0.0
3,307,562	-		BT2655	0.29	-1.2
3,307,576	+		BT2655	0.30	-2.7
3,307,588	-		BT2655	0.30	-1.2
3,307,633	+		BT2655	0.31	-1.0
3,307,634	-		BT2655	0.31	-2.0
3,307,634	-		BT2655	0.31	-1.7
3,307,681	+		BT2655	0.33	-1.2
3,307,682	-		BT2655	0.33	-1.2
3,307,700	+		BT2655	0.33	+0.6
3,307,701	-		BT2655	0.33	-1.1
3,307,701	-		BT2655	0.33	-1.7
3,307,703	-		BT2655	0.33	-1.8
3,307,703	-		BT2655	0.33	-0.7
3,307,718	-		BT2655	0.34	-1.7
3,307,718	-		BT2655	0.34	-2.2
3,307,718	-		BT2655	0.34	-1.6
3,307,796	-		BT2655	0.36	-2.4
3,307,839	-		BT2655	0.38	+1.6
3,307,864	+		BT2655	0.38	-3.3
3,307,878	+		BT2655	0.39	-1.8
3,307,880	+		BT2655	0.39	-1.7
3,307,918	+		BT2655	0.40	-2.4
3,307,919	-		BT2655	0.40	-1.1
3,307,994	+		BT2655	0.42	-1.4
3,307,995	-		BT2655	0.43	+0.6
3,307,995	-		BT2655	0.43	-0.2
3,307,998	+		BT2655	0.43	-0.4
3,307,999	-		BT2655	0.43	-2.1
3,308,017	-		BT2655	0.43	-1.4
3,308,050	+		BT2655	0.44	-1.3
3,308,050	+		BT2655	0.44	-2.8
3,308,052	+		BT2655	0.44	-2.5
3,308,054	+		BT2655	0.44	+0.9
3,308,055	-		BT2655	0.44	-2.9
3,308,060	+		BT2655	0.45	-0.4
3,308,061	-		BT2655	0.45	-0.2
3,308,063	-		BT2655	0.45	-1.5
3,308,063	-		BT2655	0.45	-1.8
3,308,068	+		BT2655	0.45	-1.2
3,308,068	+		BT2655	0.45	+0.4
3,308,069	-		BT2655	0.45	-0.0
3,308,075	+				-0.4
3,308,075	+		BT2655	0.45	-0.4
3,308,075	+		BT2655	0.45	-0.4
3,308,076	-		BT2655	0.45	-2.4
3,308,076	-		BT2655	0.45	-3.7
3,308,077	+		BT2655	0.45	-3.1
3,308,078	-		BT2655	0.45	-4.7
3,308,152	-		BT2655	0.47	-1.2
3,308,181	+		BT2655	0.48	-1.9
3,308,184	+		BT2655	0.48	-1.2
3,308,212	+		BT2655	0.49	-0.8
3,308,213	-		BT2655	0.49	-1.2
3,308,248	+		BT2655	0.50	-3.1
3,308,249	-		BT2655	0.50	-1.7
3,308,253	-		BT2655	0.50	-0.4
3,308,295	-		BT2655	0.52	-1.1
3,308,354	-		BT2655	0.54	-1.1
3,308,354	-		BT2655	0.54	-1.2
3,308,446	+		BT2655	0.56	-1.2
3,308,446	+		BT2655	0.56	-1.1
3,308,554	+		BT2655	0.60	+0.6
3,308,555	-		BT2655	0.60	-1.6
3,308,555	-		BT2655	0.60	-1.3
3,308,561	-		BT2655	0.60	-1.0
3,308,572	+		BT2655	0.60	-1.6
3,308,586	+		BT2655	0.61	-0.0
3,308,626	+		BT2655	0.62	-2.0
3,308,626	+		BT2655	0.62	-0.4
3,308,627	-		BT2655	0.62	-2.1
3,308,627	-		BT2655	0.62	-2.0
3,308,642	+		BT2655	0.63	-2.7
3,308,656	+		BT2655	0.63	-2.4
3,308,660	-		BT2655	0.63	-1.6
3,308,667	+		BT2655	0.63	-0.6
3,308,668	-		BT2655	0.63	-3.5
3,308,686	+		BT2655	0.64	-1.8
3,308,687	-		BT2655	0.64	-0.0
3,308,688	+		BT2655	0.64	-1.2
3,308,688	+		BT2655	0.64	-1.2
3,308,689	-		BT2655	0.64	-1.1
3,308,689	-		BT2655	0.64	-0.0
3,308,689	-		BT2655	0.64	-1.9
3,308,689	-		BT2655	0.64	-2.6
3,308,692	+		BT2655	0.64	-1.9
3,308,692	+		BT2655	0.64	-0.7
3,308,692	+		BT2655	0.64	-0.0
3,308,693	-		BT2655	0.64	-1.1
3,308,702	+		BT2655	0.64	-2.9
3,308,703	-		BT2655	0.64	-2.1
3,308,703	-		BT2655	0.64	-1.5
3,308,703	-		BT2655	0.64	-0.4
3,308,703	-		BT2655	0.64	-0.3
3,308,703	-		BT2655	0.64	-2.1
3,308,722	-		BT2655	0.65	-0.7
3,308,731	-		BT2655	0.65	-1.9
3,308,763	-		BT2655	0.66	-1.0
3,308,763	-		BT2655	0.66	-1.5
3,308,810	-		BT2655	0.68	-3.9
3,308,815	-		BT2655	0.68	-0.7
3,308,815	-		BT2655	0.68	-1.6
3,308,850	+		BT2655	0.69	-1.9
3,308,877	+		BT2655	0.70	-2.5
3,308,910	+		BT2655	0.71	-1.7
3,308,910	+		BT2655	0.71	+1.8
3,308,910	+		BT2655	0.71	+0.6
3,308,927	+		BT2655	0.71	-2.2
3,308,974	+		BT2655	0.73	-1.6
3,308,979	+		BT2655	0.73	-2.1
3,308,980	-				-0.7
3,308,980	-		BT2655	0.73	-1.9
3,308,985	-		BT2655	0.73	-1.1
3,308,985	-		BT2655	0.73	-0.8
3,309,003	-		BT2655	0.74	+1.4
3,309,068	-		BT2655	0.76	+0.8
3,309,075	-		BT2655	0.76	-2.5
3,309,075	-		BT2655	0.76	-3.4
3,309,129	+		BT2655	0.78	-4.0
3,309,140	+		BT2655	0.78	-2.3
3,309,141	-		BT2655	0.78	-1.1
3,309,190	+		BT2655	0.80	-1.9
3,309,194	+		BT2655	0.80	-1.3
3,309,194	+		BT2655	0.80	-1.0
3,309,200	+		BT2655	0.80	-2.8
3,309,201	-		BT2655	0.80	-1.9
3,309,287	-		BT2655	0.83	-3.8
3,309,287	-		BT2655	0.83	-0.5
3,309,356	-		BT2655	0.85	-0.5
3,309,383	+		BT2655	0.86	-2.1
3,309,383	+		BT2655	0.86	+0.6
3,309,383	+		BT2655	0.86	-2.1
3,309,384	-		BT2655	0.86	+0.6
3,309,384	-		BT2655	0.86	-1.5
3,309,389	-		BT2655	0.86	-2.0
3,309,412	+		BT2655	0.86	-0.7
3,309,419	-		BT2655	0.87	-0.4
3,309,432	+		BT2655	0.87	-1.7
3,309,433	-		BT2655	0.87	-0.0
3,309,436	+		BT2655	0.87	-0.7
3,309,436	+		BT2655	0.87	+0.4
3,309,437	-		BT2655	0.87	-3.0
3,309,438	+		BT2655	0.87	-2.0
3,309,438	+		BT2655	0.87	+0.6
3,309,438	+		BT2655	0.87	+1.6
3,309,439	-		BT2655	0.87	-2.4
3,309,538	+				-0.7
3,309,557	-				-2.3
3,309,563	-				-1.6
3,309,597	+				-1.4
3,309,630	+				-1.1
3,309,631	-				-3.1
3,309,631	-				-1.4
3,309,631	-				-1.1
3,309,689	+				-0.7
3,309,690	-				-1.7
3,309,690	-				+3.6
3,309,727	+				-0.9
3,309,728	-				-0.2
3,309,817	+				-2.4
3,309,817	+				-1.4
3,309,818	-				-0.4
3,309,829	+				-2.7
3,309,831	+				-2.4
3,309,835	+				-0.4
3,309,836	-				-1.9
3,309,947	+				-0.4
3,309,950	+				-0.2
3,309,950	+				-1.7
3,309,973	+				-0.2
3,309,973	+				-2.1
3,309,986	+				-0.7
3,310,102	+		BT2656	0.19	+1.6
3,310,103	-		BT2656	0.19	+0.2
3,310,123	-		BT2656	0.21	+0.6
3,310,201	+		BT2656	0.28	+1.6
3,310,201	+		BT2656	0.28	-0.7
3,310,201	+		BT2656	0.28	-0.6
3,310,201	+		BT2656	0.28	-1.6
3,310,207	-		BT2656	0.29	-2.1
3,310,238	+		BT2656	0.31	-2.9
3,310,238	+		BT2656	0.31	-1.0
3,310,281	+		BT2656	0.35	-0.6
3,310,281	+		BT2656	0.35	-1.2
3,310,282	-		BT2656	0.35	+1.3
3,310,282	-		BT2656	0.35	+1.4
3,310,285	+		BT2656	0.36	-1.3
3,310,286	-		BT2656	0.36	-2.3
3,310,302	+		BT2656	0.37	-1.6
3,310,303	-		BT2656	0.37	-2.5
3,310,305	+		BT2656	0.38	-0.7
3,310,445	+		BT2656	0.50	+2.6
3,310,450	+		BT2656	0.51	-1.4
3,310,452	+		BT2656	0.51	-0.8
3,310,452	+		BT2656	0.51	-1.0
3,310,452	+		BT2656	0.51	-3.9
3,310,525	+		BT2656	0.58	-0.7
3,310,526	-		BT2656	0.58	-3.6
3,310,526	-		BT2656	0.58	-1.7
3,310,527	+		BT2656	0.58	-0.7
3,310,736	+		BT2656	0.77	-1.9
3,310,738	+		BT2656	0.77	-2.9
3,310,738	+		BT2656	0.77	-3.5
3,310,738	+		BT2656	0.77	-0.0
3,310,741	+		BT2656	0.78	-2.1
3,310,750	+		BT2656	0.78	-2.6
3,310,789	+		BT2656	0.82	-1.2
3,310,797	-		BT2656	0.83	-0.4