Experiment: Hyaluronic from Streptococcus equi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0761 and BT0762 are separated by 32 nucleotides BT0762 and tRNA-Arg are separated by 135 nucleotides tRNA-Arg and BT0763 are separated by 292 nucleotides BT0763 and BT0764 are separated by 49 nucleotides
BT0761: BT0761 - conserved hypothetical protein (NCBI ptt file), at 949,431 to 951,479
BT0761
BT0762: BT0762 - hypothetical protein (NCBI ptt file), at 951,512 to 951,697
BT0762
BT_t09: tRNA-Arg - tRNA-Arg (RefSeq), at 951,833 to 951,906
tRNA-Arg
BT0763: BT0763 - conserved hypothetical protein (NCBI ptt file), at 952,199 to 953,884
BT0763
BT0764: BT0764 - hypothetical protein (NCBI ptt file), at 953,934 to 955,268
BT0764
Position (kb) 952
953
954 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 951.261 kb on - strand, within BT0761 at 951.419 kb on + strand at 951.505 kb on - strand at 951.509 kb on + strand at 951.510 kb on - strand at 951.513 kb on + strand at 951.565 kb on - strand, within BT0762 at 951.565 kb on - strand, within BT0762 at 951.651 kb on + strand, within BT0762 at 951.651 kb on + strand, within BT0762 at 951.663 kb on + strand, within BT0762 at 951.666 kb on - strand, within BT0762 at 952.057 kb on - strand at 952.093 kb on - strand at 952.100 kb on + strand at 952.264 kb on + strand at 952.372 kb on + strand, within BT0763 at 952.432 kb on + strand, within BT0763 at 952.447 kb on + strand, within BT0763 at 952.471 kb on + strand, within BT0763 at 952.512 kb on - strand, within BT0763 at 952.513 kb on + strand, within BT0763 at 952.538 kb on - strand, within BT0763 at 952.735 kb on + strand, within BT0763 at 952.757 kb on - strand, within BT0763 at 952.908 kb on - strand, within BT0763 at 952.926 kb on - strand, within BT0763 at 952.933 kb on + strand, within BT0763 at 952.985 kb on + strand, within BT0763 at 952.985 kb on + strand, within BT0763 at 952.985 kb on + strand, within BT0763 at 953.049 kb on - strand, within BT0763 at 953.085 kb on + strand, within BT0763 at 953.091 kb on - strand, within BT0763 at 953.157 kb on - strand, within BT0763 at 953.159 kb on + strand, within BT0763 at 953.162 kb on + strand, within BT0763 at 953.163 kb on - strand, within BT0763 at 953.533 kb on - strand, within BT0763 at 953.573 kb on - strand, within BT0763 at 953.608 kb on + strand, within BT0763 at 953.610 kb on + strand, within BT0763 at 953.696 kb on + strand, within BT0763 at 953.735 kb on - strand at 953.765 kb on - strand at 953.882 kb on + strand at 953.975 kb on + strand at 953.976 kb on - strand at 954.144 kb on - strand, within BT0764 at 954.268 kb on + strand, within BT0764 at 954.275 kb on + strand, within BT0764 at 954.276 kb on - strand, within BT0764 at 954.346 kb on + strand, within BT0764 at 954.348 kb on + strand, within BT0764 at 954.349 kb on - strand, within BT0764 at 954.352 kb on - strand, within BT0764 at 954.352 kb on - strand, within BT0764 at 954.383 kb on + strand, within BT0764 at 954.387 kb on + strand, within BT0764 at 954.388 kb on - strand, within BT0764 at 954.388 kb on - strand, within BT0764 at 954.408 kb on - strand, within BT0764 at 954.430 kb on - strand, within BT0764 at 954.475 kb on + strand, within BT0764 at 954.476 kb on - strand, within BT0764 at 954.509 kb on + strand, within BT0764 at 954.509 kb on + strand, within BT0764 at 954.509 kb on + strand, within BT0764 at 954.510 kb on - strand, within BT0764 at 954.829 kb on - strand, within BT0764
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi remove 951,261 - BT0761 0.89 -3.1 951,419 + -3.4 951,505 - -0.9 951,509 + -0.2 951,510 - -1.0 951,513 + -0.7 951,565 - BT0762 0.28 +0.6 951,565 - BT0762 0.28 -1.1 951,651 + BT0762 0.75 +1.6 951,651 + BT0762 0.75 -1.9 951,663 + BT0762 0.81 +1.0 951,666 - BT0762 0.83 -1.1 952,057 - -1.2 952,093 - -1.0 952,100 + -0.7 952,264 + +2.2 952,372 + BT0763 0.10 -1.4 952,432 + BT0763 0.14 +0.8 952,447 + BT0763 0.15 +1.1 952,471 + BT0763 0.16 +0.0 952,512 - BT0763 0.19 +0.6 952,513 + BT0763 0.19 +0.6 952,538 - BT0763 0.20 -0.7 952,735 + BT0763 0.32 -0.6 952,757 - BT0763 0.33 -0.4 952,908 - BT0763 0.42 -0.7 952,926 - BT0763 0.43 -0.9 952,933 + BT0763 0.44 -1.0 952,985 + BT0763 0.47 -1.0 952,985 + BT0763 0.47 -1.1 952,985 + BT0763 0.47 -0.6 953,049 - BT0763 0.50 -1.1 953,085 + BT0763 0.53 -1.6 953,091 - BT0763 0.53 -1.0 953,157 - BT0763 0.57 +0.6 953,159 + BT0763 0.57 -1.2 953,162 + BT0763 0.57 +1.0 953,163 - BT0763 0.57 -1.9 953,533 - BT0763 0.79 -3.9 953,573 - BT0763 0.81 +1.6 953,608 + BT0763 0.84 -0.3 953,610 + BT0763 0.84 +0.0 953,696 + BT0763 0.89 -0.8 953,735 - -2.7 953,765 - -1.7 953,882 + -0.7 953,975 + -1.6 953,976 - -1.0 954,144 - BT0764 0.16 -2.0 954,268 + BT0764 0.25 +0.6 954,275 + BT0764 0.26 +2.9 954,276 - BT0764 0.26 +0.4 954,346 + BT0764 0.31 -2.5 954,348 + BT0764 0.31 -2.4 954,349 - BT0764 0.31 -1.4 954,352 - BT0764 0.31 +0.0 954,352 - BT0764 0.31 -2.2 954,383 + BT0764 0.34 -1.2 954,387 + BT0764 0.34 -0.5 954,388 - BT0764 0.34 -0.4 954,388 - BT0764 0.34 +0.6 954,408 - BT0764 0.36 -0.1 954,430 - BT0764 0.37 -2.3 954,475 + BT0764 0.41 -0.5 954,476 - BT0764 0.41 +0.0 954,509 + BT0764 0.43 -1.0 954,509 + BT0764 0.43 -1.4 954,509 + BT0764 0.43 +0.0 954,510 - BT0764 0.43 +0.0 954,829 - BT0764 0.67 -0.1
Or see this region's nucleotide sequence