Experiment: Hyaluronic from Streptococcus equi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0605 and BT0606 are separated by 60 nucleotides BT0606 and BT0607 are separated by 6 nucleotides BT0607 and BT0608 are separated by 96 nucleotides
BT0605: BT0605 - putative polysaccharide export protein (NCBI ptt file), at 746,614 to 748,059
BT0605
BT0606: BT0606 - hypothetical protein (NCBI ptt file), at 748,120 to 749,340
BT0606
BT0607: BT0607 - serine O-acetyltransferase (NCBI ptt file), at 749,347 to 749,922
BT0607
BT0608: BT0608 - glycosyltransferase (NCBI ptt file), at 750,019 to 751,098
BT0608
Position (kb) 748
749
750 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 747.149 kb on + strand, within BT0605 at 747.242 kb on + strand, within BT0605 at 747.295 kb on - strand, within BT0605 at 747.441 kb on - strand, within BT0605 at 747.616 kb on + strand, within BT0605 at 747.665 kb on - strand, within BT0605 at 747.665 kb on - strand, within BT0605 at 747.694 kb on + strand, within BT0605 at 747.822 kb on + strand, within BT0605 at 747.823 kb on - strand, within BT0605 at 747.894 kb on + strand, within BT0605 at 747.913 kb on + strand, within BT0605 at 747.914 kb on - strand, within BT0605 at 747.916 kb on - strand at 747.918 kb on - strand at 748.080 kb on - strand at 748.080 kb on - strand at 748.118 kb on - strand at 748.189 kb on + strand at 748.236 kb on - strand at 748.248 kb on - strand, within BT0606 at 748.309 kb on + strand, within BT0606 at 748.388 kb on + strand, within BT0606 at 748.393 kb on + strand, within BT0606 at 748.520 kb on - strand, within BT0606 at 748.646 kb on - strand, within BT0606 at 748.650 kb on - strand, within BT0606 at 748.679 kb on - strand, within BT0606 at 748.862 kb on + strand, within BT0606 at 748.862 kb on + strand, within BT0606 at 748.867 kb on - strand, within BT0606 at 748.871 kb on + strand, within BT0606 at 749.037 kb on + strand, within BT0606 at 749.038 kb on - strand, within BT0606 at 749.089 kb on + strand, within BT0606 at 749.090 kb on - strand, within BT0606 at 749.193 kb on - strand, within BT0606 at 749.236 kb on - strand at 749.286 kb on - strand at 749.302 kb on - strand at 749.407 kb on - strand, within BT0607 at 749.442 kb on + strand, within BT0607 at 749.604 kb on + strand, within BT0607 at 749.605 kb on - strand, within BT0607 at 749.711 kb on + strand, within BT0607 at 749.712 kb on - strand, within BT0607 at 749.775 kb on - strand, within BT0607 at 749.789 kb on + strand, within BT0607 at 749.789 kb on + strand, within BT0607 at 749.807 kb on + strand, within BT0607 at 749.811 kb on + strand, within BT0607 at 749.820 kb on + strand, within BT0607 at 750.039 kb on + strand at 750.040 kb on - strand at 750.040 kb on - strand at 750.041 kb on + strand at 750.041 kb on + strand at 750.141 kb on + strand, within BT0608 at 750.201 kb on - strand, within BT0608 at 750.209 kb on + strand, within BT0608 at 750.268 kb on + strand, within BT0608 at 750.307 kb on + strand, within BT0608 at 750.316 kb on - strand, within BT0608 at 750.324 kb on + strand, within BT0608 at 750.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi remove 747,149 + BT0605 0.37 -2.0 747,242 + BT0605 0.43 +4.5 747,295 - BT0605 0.47 -1.0 747,441 - BT0605 0.57 -1.1 747,616 + BT0605 0.69 +0.8 747,665 - BT0605 0.73 +0.4 747,665 - BT0605 0.73 +0.0 747,694 + BT0605 0.75 +0.4 747,822 + BT0605 0.84 +2.5 747,823 - BT0605 0.84 +2.7 747,894 + BT0605 0.89 +0.9 747,913 + BT0605 0.90 +3.1 747,914 - BT0605 0.90 +0.4 747,916 - -0.5 747,918 - +3.5 748,080 - +3.5 748,080 - +4.0 748,118 - -0.3 748,189 + -1.8 748,236 - -0.3 748,248 - BT0606 0.10 +1.1 748,309 + BT0606 0.15 -1.1 748,388 + BT0606 0.22 -0.9 748,393 + BT0606 0.22 +0.4 748,520 - BT0606 0.33 +1.7 748,646 - BT0606 0.43 +0.8 748,650 - BT0606 0.43 +0.9 748,679 - BT0606 0.46 +1.2 748,862 + BT0606 0.61 +2.5 748,862 + BT0606 0.61 +1.0 748,867 - BT0606 0.61 +1.7 748,871 + BT0606 0.62 +1.4 749,037 + BT0606 0.75 +4.7 749,038 - BT0606 0.75 +0.7 749,089 + BT0606 0.79 +0.8 749,090 - BT0606 0.79 +1.5 749,193 - BT0606 0.88 -0.3 749,236 - +1.3 749,286 - +1.4 749,302 - +0.7 749,407 - BT0607 0.10 -0.1 749,442 + BT0607 0.16 +0.5 749,604 + BT0607 0.45 +0.3 749,605 - BT0607 0.45 +0.6 749,711 + BT0607 0.63 +0.3 749,712 - BT0607 0.63 +0.5 749,775 - BT0607 0.74 +0.5 749,789 + BT0607 0.77 +0.1 749,789 + BT0607 0.77 -2.0 749,807 + BT0607 0.80 -0.3 749,811 + BT0607 0.81 +0.7 749,820 + BT0607 0.82 -1.5 750,039 + +0.7 750,040 - +2.3 750,040 - +0.9 750,041 + +1.2 750,041 + +1.2 750,141 + BT0608 0.11 +0.7 750,201 - BT0608 0.17 -0.8 750,209 + BT0608 0.18 -0.3 750,268 + BT0608 0.23 +2.1 750,307 + BT0608 0.27 +1.8 750,316 - BT0608 0.28 +0.9 750,324 + BT0608 0.28 +2.3 750,325 - +2.3
Or see this region's nucleotide sequence