Experiment: Hyaluronic from Streptococcus equi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0596 and BT0597 are separated by 7 nucleotides BT0597 and BT0598 are separated by 53 nucleotides BT0598 and BT0599 are separated by 34 nucleotides
BT0596: BT0596 - putative transcriptional regulator (NCBI ptt file), at 736,175 to 736,753
BT0596
BT0597: BT0597 - conserved hypothetical protein (NCBI ptt file), at 736,761 to 737,114
BT0597
BT0598: BT0598 - putative nucleoside-diphosphate sugar epimerases/dehydrase (NCBI ptt file), at 737,168 to 739,093
BT0598
BT0599: BT0599 - UDP-glucose 6-dehydrogenase (NCBI ptt file), at 739,128 to 740,444
BT0599
Position (kb) 737
738
739
740 Strain fitness (log2 ratio) -2
-1
0
1
2 at 736.256 kb on + strand, within BT0596 at 736.654 kb on - strand, within BT0596 at 737.536 kb on - strand, within BT0598 at 737.710 kb on + strand, within BT0598 at 738.276 kb on - strand, within BT0598 at 738.289 kb on - strand, within BT0598 at 738.311 kb on - strand, within BT0598 at 738.311 kb on - strand, within BT0598 at 738.496 kb on - strand, within BT0598 at 738.496 kb on - strand, within BT0598 at 738.824 kb on - strand, within BT0598 at 738.824 kb on - strand, within BT0598 at 738.867 kb on - strand, within BT0598 at 739.042 kb on - strand at 739.096 kb on - strand at 739.119 kb on - strand at 739.432 kb on + strand, within BT0599 at 739.432 kb on + strand, within BT0599 at 739.433 kb on - strand, within BT0599 at 739.483 kb on + strand, within BT0599 at 739.533 kb on + strand, within BT0599 at 739.611 kb on - strand, within BT0599 at 739.775 kb on + strand, within BT0599 at 739.829 kb on + strand, within BT0599 at 739.833 kb on - strand, within BT0599 at 739.833 kb on - strand, within BT0599 at 739.878 kb on + strand, within BT0599 at 739.878 kb on + strand, within BT0599 at 740.072 kb on + strand, within BT0599
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi remove 736,256 + BT0596 0.14 +1.7 736,654 - BT0596 0.83 -1.9 737,536 - BT0598 0.19 +1.2 737,710 + BT0598 0.28 +0.5 738,276 - BT0598 0.58 -1.8 738,289 - BT0598 0.58 -1.1 738,311 - BT0598 0.59 -0.6 738,311 - BT0598 0.59 +0.6 738,496 - BT0598 0.69 +0.7 738,496 - BT0598 0.69 +1.7 738,824 - BT0598 0.86 +1.9 738,824 - BT0598 0.86 +0.0 738,867 - BT0598 0.88 +0.7 739,042 - -1.0 739,096 - +1.7 739,119 - -0.0 739,432 + BT0599 0.23 +0.1 739,432 + BT0599 0.23 +1.2 739,433 - BT0599 0.23 -0.3 739,483 + BT0599 0.27 -1.1 739,533 + BT0599 0.31 +0.4 739,611 - BT0599 0.37 +0.1 739,775 + BT0599 0.49 +2.3 739,829 + BT0599 0.53 -1.6 739,833 - BT0599 0.54 +0.6 739,833 - BT0599 0.54 +0.0 739,878 + BT0599 0.57 +0.4 739,878 + BT0599 0.57 +0.4 740,072 + BT0599 0.72 -1.9
Or see this region's nucleotide sequence