Experiment: Hyaluronic from Streptococcus equi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0386 and BT0387 overlap by 1 nucleotides BT0387 and BT0388 are separated by 24 nucleotides BT0388 and BT0389 are separated by 4 nucleotides
BT0386: BT0386 - putative F420H2-dehydrogenase (NCBI ptt file), at 475,269 to 476,462
BT0386
BT0387: BT0387 - NADH dehydrogenase subunit 2 (NCBI ptt file), at 476,462 to 477,778
BT0387
BT0388: BT0388 - galactoside O-acetyltransferase (NCBI ptt file), at 477,803 to 478,426
BT0388
BT0389: BT0389 - putative galactoside acetyltransferase (NCBI ptt file), at 478,431 to 478,976
BT0389
Position (kb) 476
477
478 Strain fitness (log2 ratio) -2
-1
0
1
2 at 475.494 kb on + strand, within BT0386 at 475.515 kb on - strand, within BT0386 at 475.540 kb on + strand, within BT0386 at 475.542 kb on + strand, within BT0386 at 475.542 kb on + strand, within BT0386 at 475.600 kb on + strand, within BT0386 at 475.601 kb on - strand, within BT0386 at 475.701 kb on + strand, within BT0386 at 475.701 kb on + strand, within BT0386 at 475.702 kb on - strand, within BT0386 at 475.702 kb on - strand, within BT0386 at 475.706 kb on - strand, within BT0386 at 475.747 kb on - strand, within BT0386 at 475.805 kb on + strand, within BT0386 at 475.815 kb on - strand, within BT0386 at 475.866 kb on + strand, within BT0386 at 475.866 kb on + strand, within BT0386 at 475.949 kb on + strand, within BT0386 at 475.956 kb on - strand, within BT0386 at 476.003 kb on - strand, within BT0386 at 476.109 kb on - strand, within BT0386 at 476.109 kb on - strand, within BT0386 at 476.111 kb on + strand, within BT0386 at 476.182 kb on + strand, within BT0386 at 476.202 kb on - strand, within BT0386 at 476.293 kb on - strand, within BT0386 at 476.301 kb on - strand, within BT0386 at 476.301 kb on - strand, within BT0386 at 476.331 kb on + strand, within BT0386 at 476.495 kb on - strand at 476.554 kb on - strand at 476.606 kb on - strand, within BT0387 at 476.627 kb on - strand, within BT0387 at 476.740 kb on + strand, within BT0387 at 476.740 kb on + strand, within BT0387 at 476.763 kb on + strand, within BT0387 at 476.794 kb on + strand, within BT0387 at 476.802 kb on + strand, within BT0387 at 476.803 kb on - strand, within BT0387 at 476.803 kb on - strand, within BT0387 at 476.804 kb on + strand, within BT0387 at 476.881 kb on - strand, within BT0387 at 477.020 kb on - strand, within BT0387 at 477.087 kb on + strand, within BT0387 at 477.180 kb on - strand, within BT0387 at 477.314 kb on + strand, within BT0387 at 477.405 kb on + strand, within BT0387 at 477.444 kb on + strand, within BT0387 at 477.504 kb on + strand, within BT0387 at 477.610 kb on - strand, within BT0387 at 477.610 kb on - strand, within BT0387 at 477.650 kb on - strand at 477.712 kb on + strand at 477.712 kb on + strand at 477.736 kb on - strand at 477.777 kb on - strand at 477.849 kb on - strand at 477.865 kb on - strand at 477.955 kb on + strand, within BT0388 at 478.022 kb on - strand, within BT0388 at 478.078 kb on + strand, within BT0388 at 478.123 kb on - strand, within BT0388 at 478.135 kb on + strand, within BT0388 at 478.136 kb on - strand, within BT0388 at 478.280 kb on - strand, within BT0388 at 478.352 kb on - strand, within BT0388 at 478.354 kb on - strand, within BT0388 at 478.378 kb on + strand at 478.393 kb on - strand at 478.435 kb on + strand at 478.593 kb on - strand, within BT0389 at 478.672 kb on + strand, within BT0389 at 478.673 kb on - strand, within BT0389 at 478.730 kb on + strand, within BT0389
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi remove 475,494 + BT0386 0.19 +0.3 475,515 - BT0386 0.21 +0.1 475,540 + BT0386 0.23 +0.5 475,542 + BT0386 0.23 +2.5 475,542 + BT0386 0.23 -0.7 475,600 + BT0386 0.28 -0.7 475,601 - BT0386 0.28 +1.6 475,701 + BT0386 0.36 +1.7 475,701 + BT0386 0.36 -0.0 475,702 - BT0386 0.36 +1.6 475,702 - BT0386 0.36 -0.6 475,706 - BT0386 0.37 +2.6 475,747 - BT0386 0.40 +0.2 475,805 + BT0386 0.45 -0.1 475,815 - BT0386 0.46 -0.3 475,866 + BT0386 0.50 +0.1 475,866 + BT0386 0.50 -0.3 475,949 + BT0386 0.57 -1.9 475,956 - BT0386 0.58 +1.6 476,003 - BT0386 0.61 +0.0 476,109 - BT0386 0.70 +1.2 476,109 - BT0386 0.70 +0.4 476,111 + BT0386 0.71 -1.2 476,182 + BT0386 0.76 -0.7 476,202 - BT0386 0.78 +0.6 476,293 - BT0386 0.86 -1.8 476,301 - BT0386 0.86 -0.4 476,301 - BT0386 0.86 +1.6 476,331 + BT0386 0.89 -0.7 476,495 - +1.0 476,554 - +1.6 476,606 - BT0387 0.11 -2.0 476,627 - BT0387 0.13 +1.6 476,740 + BT0387 0.21 +0.4 476,740 + BT0387 0.21 +0.3 476,763 + BT0387 0.23 +0.7 476,794 + BT0387 0.25 +0.8 476,802 + BT0387 0.26 -0.7 476,803 - BT0387 0.26 -0.7 476,803 - BT0387 0.26 -2.2 476,804 + BT0387 0.26 +0.3 476,881 - BT0387 0.32 +0.5 477,020 - BT0387 0.42 +1.9 477,087 + BT0387 0.47 +1.9 477,180 - BT0387 0.55 +1.6 477,314 + BT0387 0.65 -0.3 477,405 + BT0387 0.72 +0.0 477,444 + BT0387 0.75 -0.6 477,504 + BT0387 0.79 -1.1 477,610 - BT0387 0.87 +0.0 477,610 - BT0387 0.87 -1.0 477,650 - -0.4 477,712 + +1.2 477,712 + -1.0 477,736 - +0.3 477,777 - -0.9 477,849 - -0.5 477,865 - -0.1 477,955 + BT0388 0.24 +0.0 478,022 - BT0388 0.35 +1.8 478,078 + BT0388 0.44 -1.0 478,123 - BT0388 0.51 +0.6 478,135 + BT0388 0.53 -0.5 478,136 - BT0388 0.53 -0.6 478,280 - BT0388 0.76 -0.4 478,352 - BT0388 0.88 -0.9 478,354 - BT0388 0.88 -0.3 478,378 + -1.7 478,393 - -1.7 478,435 + +0.5 478,593 - BT0389 0.30 -1.6 478,672 + BT0389 0.44 -0.7 478,673 - BT0389 0.44 -2.1 478,730 + BT0389 0.55 -0.1
Or see this region's nucleotide sequence