Experiment: Hyaluronic from Streptococcus equi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0385 and BT0386 overlap by 4 nucleotides BT0386 and BT0387 overlap by 1 nucleotides
BT0385: BT0385 - conserved hypothetical protein (NCBI ptt file), at 474,112 to 475,272
BT0385
BT0386: BT0386 - putative F420H2-dehydrogenase (NCBI ptt file), at 475,269 to 476,462
BT0386
BT0387: BT0387 - NADH dehydrogenase subunit 2 (NCBI ptt file), at 476,462 to 477,778
BT0387
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 474.274 kb on - strand, within BT0385 at 474.294 kb on + strand, within BT0385 at 474.322 kb on + strand, within BT0385 at 474.327 kb on + strand, within BT0385 at 474.365 kb on + strand, within BT0385 at 474.385 kb on + strand, within BT0385 at 474.469 kb on + strand, within BT0385 at 474.536 kb on - strand, within BT0385 at 474.602 kb on - strand, within BT0385 at 474.617 kb on + strand, within BT0385 at 474.691 kb on + strand, within BT0385 at 474.724 kb on - strand, within BT0385 at 474.767 kb on + strand, within BT0385 at 474.768 kb on - strand, within BT0385 at 474.835 kb on - strand, within BT0385 at 474.847 kb on - strand, within BT0385 at 474.848 kb on + strand, within BT0385 at 474.849 kb on - strand, within BT0385 at 474.858 kb on - strand, within BT0385 at 475.059 kb on + strand, within BT0385 at 475.059 kb on + strand, within BT0385 at 475.170 kb on - strand at 475.191 kb on - strand at 475.290 kb on - strand at 475.327 kb on + strand at 475.414 kb on + strand, within BT0386 at 475.494 kb on + strand, within BT0386 at 475.515 kb on - strand, within BT0386 at 475.540 kb on + strand, within BT0386 at 475.542 kb on + strand, within BT0386 at 475.542 kb on + strand, within BT0386 at 475.600 kb on + strand, within BT0386 at 475.601 kb on - strand, within BT0386 at 475.701 kb on + strand, within BT0386 at 475.701 kb on + strand, within BT0386 at 475.702 kb on - strand, within BT0386 at 475.702 kb on - strand, within BT0386 at 475.706 kb on - strand, within BT0386 at 475.747 kb on - strand, within BT0386 at 475.805 kb on + strand, within BT0386 at 475.815 kb on - strand, within BT0386 at 475.866 kb on + strand, within BT0386 at 475.866 kb on + strand, within BT0386 at 475.949 kb on + strand, within BT0386 at 475.956 kb on - strand, within BT0386 at 476.003 kb on - strand, within BT0386 at 476.109 kb on - strand, within BT0386 at 476.109 kb on - strand, within BT0386 at 476.111 kb on + strand, within BT0386 at 476.182 kb on + strand, within BT0386 at 476.202 kb on - strand, within BT0386 at 476.293 kb on - strand, within BT0386 at 476.301 kb on - strand, within BT0386 at 476.301 kb on - strand, within BT0386 at 476.331 kb on + strand, within BT0386 at 476.495 kb on - strand at 476.554 kb on - strand at 476.606 kb on - strand, within BT0387 at 476.627 kb on - strand, within BT0387 at 476.740 kb on + strand, within BT0387 at 476.740 kb on + strand, within BT0387 at 476.763 kb on + strand, within BT0387 at 476.794 kb on + strand, within BT0387 at 476.802 kb on + strand, within BT0387 at 476.803 kb on - strand, within BT0387 at 476.803 kb on - strand, within BT0387 at 476.804 kb on + strand, within BT0387 at 476.881 kb on - strand, within BT0387 at 477.020 kb on - strand, within BT0387 at 477.087 kb on + strand, within BT0387 at 477.180 kb on - strand, within BT0387 at 477.314 kb on + strand, within BT0387 at 477.405 kb on + strand, within BT0387 at 477.444 kb on + strand, within BT0387
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi remove 474,274 - BT0385 0.14 +0.0 474,294 + BT0385 0.16 +1.8 474,322 + BT0385 0.18 +0.6 474,327 + BT0385 0.19 +1.3 474,365 + BT0385 0.22 -0.9 474,385 + BT0385 0.24 +1.6 474,469 + BT0385 0.31 +0.0 474,536 - BT0385 0.37 -1.6 474,602 - BT0385 0.42 +0.7 474,617 + BT0385 0.43 -0.9 474,691 + BT0385 0.50 +1.8 474,724 - BT0385 0.53 -1.0 474,767 + BT0385 0.56 +0.4 474,768 - BT0385 0.57 +1.8 474,835 - BT0385 0.62 -0.6 474,847 - BT0385 0.63 +0.2 474,848 + BT0385 0.63 +1.6 474,849 - BT0385 0.63 +0.0 474,858 - BT0385 0.64 -1.9 475,059 + BT0385 0.82 +1.2 475,059 + BT0385 0.82 -0.2 475,170 - +1.6 475,191 - +1.6 475,290 - +1.4 475,327 + -0.9 475,414 + BT0386 0.12 +3.1 475,494 + BT0386 0.19 +0.3 475,515 - BT0386 0.21 +0.1 475,540 + BT0386 0.23 +0.5 475,542 + BT0386 0.23 +2.5 475,542 + BT0386 0.23 -0.7 475,600 + BT0386 0.28 -0.7 475,601 - BT0386 0.28 +1.6 475,701 + BT0386 0.36 +1.7 475,701 + BT0386 0.36 -0.0 475,702 - BT0386 0.36 +1.6 475,702 - BT0386 0.36 -0.6 475,706 - BT0386 0.37 +2.6 475,747 - BT0386 0.40 +0.2 475,805 + BT0386 0.45 -0.1 475,815 - BT0386 0.46 -0.3 475,866 + BT0386 0.50 +0.1 475,866 + BT0386 0.50 -0.3 475,949 + BT0386 0.57 -1.9 475,956 - BT0386 0.58 +1.6 476,003 - BT0386 0.61 +0.0 476,109 - BT0386 0.70 +1.2 476,109 - BT0386 0.70 +0.4 476,111 + BT0386 0.71 -1.2 476,182 + BT0386 0.76 -0.7 476,202 - BT0386 0.78 +0.6 476,293 - BT0386 0.86 -1.8 476,301 - BT0386 0.86 -0.4 476,301 - BT0386 0.86 +1.6 476,331 + BT0386 0.89 -0.7 476,495 - +1.0 476,554 - +1.6 476,606 - BT0387 0.11 -2.0 476,627 - BT0387 0.13 +1.6 476,740 + BT0387 0.21 +0.4 476,740 + BT0387 0.21 +0.3 476,763 + BT0387 0.23 +0.7 476,794 + BT0387 0.25 +0.8 476,802 + BT0387 0.26 -0.7 476,803 - BT0387 0.26 -0.7 476,803 - BT0387 0.26 -2.2 476,804 + BT0387 0.26 +0.3 476,881 - BT0387 0.32 +0.5 477,020 - BT0387 0.42 +1.9 477,087 + BT0387 0.47 +1.9 477,180 - BT0387 0.55 +1.6 477,314 + BT0387 0.65 -0.3 477,405 + BT0387 0.72 +0.0 477,444 + BT0387 0.75 -0.6
Or see this region's nucleotide sequence