Experiment: Hyaluronic from Streptococcus equi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0284 and BT0285 are separated by 229 nucleotides BT0285 and BT0286 overlap by 17 nucleotides BT0286 and BT0287 are separated by 4 nucleotides BT0287 and BT0288 overlap by 26 nucleotides
BT0284: BT0284 - putative peptidoglycan binding protein (LPXTG motif) (NCBI ptt file), at 328,493 to 329,944
BT0284
BT0285: BT0285 - putative tolQ-type transport protein (NCBI ptt file), at 330,174 to 331,592
BT0285
BT0286: BT0286 - hypothetical protein (NCBI ptt file), at 331,576 to 332,022
BT0286
BT0287: BT0287 - putative biopolymer transmembrane protein (NCBI ptt file), at 332,027 to 332,452
BT0287
BT0288: BT0288 - conserved hypothetical protein (NCBI ptt file), at 332,427 to 333,950
BT0288
Position (kb) 330
331
332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 329.209 kb on + strand, within BT0284 at 329.282 kb on - strand, within BT0284 at 329.339 kb on - strand, within BT0284 at 329.587 kb on + strand, within BT0284 at 329.596 kb on + strand, within BT0284 at 329.597 kb on - strand, within BT0284 at 329.598 kb on + strand, within BT0284 at 329.600 kb on + strand, within BT0284 at 329.623 kb on + strand, within BT0284 at 329.623 kb on + strand, within BT0284 at 329.623 kb on + strand, within BT0284 at 329.626 kb on + strand, within BT0284 at 329.733 kb on + strand, within BT0284 at 329.737 kb on + strand, within BT0284 at 329.738 kb on - strand, within BT0284 at 329.818 kb on + strand at 329.842 kb on - strand at 329.849 kb on - strand at 329.894 kb on + strand at 329.895 kb on - strand at 329.896 kb on + strand at 329.900 kb on + strand at 329.901 kb on - strand at 329.960 kb on + strand at 329.961 kb on - strand at 330.006 kb on - strand at 330.011 kb on + strand at 330.012 kb on - strand at 330.238 kb on + strand at 330.378 kb on + strand, within BT0285 at 330.404 kb on - strand, within BT0285 at 330.491 kb on + strand, within BT0285 at 330.597 kb on - strand, within BT0285 at 330.642 kb on - strand, within BT0285 at 330.688 kb on + strand, within BT0285 at 330.710 kb on + strand, within BT0285 at 330.711 kb on - strand, within BT0285 at 330.711 kb on - strand, within BT0285 at 330.796 kb on + strand, within BT0285 at 330.872 kb on - strand, within BT0285 at 330.890 kb on + strand, within BT0285 at 330.890 kb on + strand, within BT0285 at 330.941 kb on + strand, within BT0285 at 330.963 kb on + strand, within BT0285 at 330.964 kb on - strand, within BT0285 at 330.973 kb on - strand, within BT0285 at 330.997 kb on + strand, within BT0285 at 331.119 kb on - strand, within BT0285 at 331.119 kb on - strand, within BT0285 at 331.123 kb on - strand, within BT0285 at 331.230 kb on - strand, within BT0285 at 331.249 kb on - strand, within BT0285 at 331.249 kb on - strand, within BT0285 at 331.364 kb on + strand, within BT0285 at 331.367 kb on - strand, within BT0285 at 331.508 kb on - strand at 331.511 kb on + strand at 331.514 kb on + strand at 331.515 kb on - strand at 331.515 kb on - strand at 331.515 kb on - strand at 331.545 kb on - strand at 331.607 kb on + strand at 331.632 kb on - strand, within BT0286 at 331.674 kb on + strand, within BT0286 at 331.675 kb on - strand, within BT0286 at 331.770 kb on - strand, within BT0286 at 331.820 kb on - strand, within BT0286 at 331.906 kb on - strand, within BT0286 at 331.906 kb on - strand, within BT0286 at 331.950 kb on - strand, within BT0286 at 331.984 kb on + strand at 331.990 kb on - strand at 332.027 kb on - strand at 332.045 kb on - strand at 332.045 kb on - strand at 332.221 kb on - strand, within BT0287 at 332.246 kb on + strand at 332.306 kb on - strand, within BT0287 at 332.339 kb on - strand, within BT0287 at 332.344 kb on + strand, within BT0287 at 332.410 kb on + strand at 332.412 kb on + strand at 332.427 kb on - strand at 332.549 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi remove 329,209 + BT0284 0.49 -1.2 329,282 - BT0284 0.54 -1.1 329,339 - BT0284 0.58 -0.2 329,587 + BT0284 0.75 -2.1 329,596 + BT0284 0.76 -1.2 329,597 - BT0284 0.76 -0.2 329,598 + BT0284 0.76 -1.5 329,600 + BT0284 0.76 -1.7 329,623 + BT0284 0.78 -2.0 329,623 + BT0284 0.78 -1.6 329,623 + BT0284 0.78 -0.6 329,626 + BT0284 0.78 -0.4 329,733 + BT0284 0.85 -3.1 329,737 + BT0284 0.86 +0.6 329,738 - BT0284 0.86 +0.1 329,818 + -1.0 329,842 - -1.0 329,849 - +1.8 329,894 + -3.3 329,895 - -1.0 329,896 + -1.6 329,900 + -1.9 329,901 - -1.4 329,960 + -0.2 329,961 - +1.8 330,006 - -1.0 330,011 + -1.0 330,012 - -0.8 330,238 + -0.8 330,378 + BT0285 0.14 -2.3 330,404 - BT0285 0.16 -1.9 330,491 + BT0285 0.22 -2.1 330,597 - BT0285 0.30 -1.8 330,642 - BT0285 0.33 -0.8 330,688 + BT0285 0.36 -1.2 330,710 + BT0285 0.38 +0.2 330,711 - BT0285 0.38 -2.7 330,711 - BT0285 0.38 -1.2 330,796 + BT0285 0.44 -0.4 330,872 - BT0285 0.49 -0.8 330,890 + BT0285 0.50 -1.9 330,890 + BT0285 0.50 -1.6 330,941 + BT0285 0.54 -0.8 330,963 + BT0285 0.56 +1.6 330,964 - BT0285 0.56 -1.2 330,973 - BT0285 0.56 -1.6 330,997 + BT0285 0.58 -2.3 331,119 - BT0285 0.67 -1.5 331,119 - BT0285 0.67 -2.3 331,123 - BT0285 0.67 -1.5 331,230 - BT0285 0.74 -0.8 331,249 - BT0285 0.76 -0.0 331,249 - BT0285 0.76 -2.3 331,364 + BT0285 0.84 -0.4 331,367 - BT0285 0.84 -2.0 331,508 - -0.6 331,511 + -0.4 331,514 + -1.9 331,515 - -1.2 331,515 - -0.8 331,515 - -1.0 331,545 - -1.9 331,607 + -0.8 331,632 - BT0286 0.13 +0.2 331,674 + BT0286 0.22 -0.0 331,675 - BT0286 0.22 -1.5 331,770 - BT0286 0.43 -3.5 331,820 - BT0286 0.55 -0.8 331,906 - BT0286 0.74 -1.8 331,906 - BT0286 0.74 -0.4 331,950 - BT0286 0.84 -1.6 331,984 + -0.8 331,990 - -1.8 332,027 - -2.1 332,045 - +1.1 332,045 - -0.0 332,221 - BT0287 0.46 -1.2 332,246 + -0.8 332,306 - BT0287 0.65 -0.1 332,339 - BT0287 0.73 -0.0 332,344 + BT0287 0.74 -2.5 332,410 + -0.0 332,412 + -0.8 332,427 - -0.4 332,549 + -0.3
Or see this region's nucleotide sequence