Experiment: Hyaluronic from Streptococcus equi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0045 and BT0046 are separated by 23 nucleotides BT0046 and BT0047 are separated by 14 nucleotides BT0047 and BT0048 are separated by 95 nucleotides BT0048 and BT0049 are separated by 8 nucleotides
BT0045: BT0045 - putative polysaccharide biosynthesis protein (NCBI ptt file), at 41,534 to 42,700
BT0045
BT0046: BT0046 - putative glycosyltransferase (NCBI ptt file), at 42,724 to 43,656
BT0046
BT0047: BT0047 - putative glycosyltransferase (NCBI ptt file), at 43,671 to 44,066
BT0047
BT0048: BT0048 - hypothetical protein (NCBI ptt file), at 44,162 to 44,638
BT0048
BT0049: BT0049 - putative glycosyltransferase (NCBI ptt file), at 44,647 to 45,582
BT0049
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.682 kb on - strand at 42.757 kb on - strand at 42.759 kb on + strand at 42.769 kb on + strand at 42.770 kb on - strand at 42.846 kb on + strand, within BT0046 at 42.878 kb on - strand, within BT0046 at 42.906 kb on - strand, within BT0046 at 42.907 kb on + strand, within BT0046 at 42.908 kb on - strand, within BT0046 at 43.161 kb on + strand, within BT0046 at 43.197 kb on - strand, within BT0046 at 43.197 kb on - strand, within BT0046 at 43.278 kb on - strand, within BT0046 at 43.325 kb on + strand, within BT0046 at 43.325 kb on + strand, within BT0046 at 43.326 kb on - strand, within BT0046 at 43.328 kb on - strand, within BT0046 at 43.341 kb on - strand, within BT0046 at 43.605 kb on - strand at 43.681 kb on + strand at 43.701 kb on + strand at 43.755 kb on - strand, within BT0047 at 43.774 kb on + strand, within BT0047 at 43.843 kb on - strand, within BT0047 at 43.858 kb on - strand, within BT0047 at 43.899 kb on + strand, within BT0047 at 43.899 kb on + strand, within BT0047 at 43.899 kb on + strand, within BT0047 at 43.957 kb on - strand, within BT0047 at 44.167 kb on + strand at 44.180 kb on - strand at 44.266 kb on - strand, within BT0048 at 44.315 kb on - strand, within BT0048 at 44.353 kb on - strand, within BT0048 at 44.376 kb on - strand, within BT0048 at 44.376 kb on - strand, within BT0048 at 44.409 kb on + strand, within BT0048 at 44.468 kb on + strand, within BT0048 at 44.510 kb on - strand, within BT0048 at 44.600 kb on - strand at 44.782 kb on + strand, within BT0049 at 44.784 kb on + strand, within BT0049 at 44.893 kb on + strand, within BT0049 at 44.978 kb on - strand, within BT0049 at 44.978 kb on - strand, within BT0049 at 44.978 kb on - strand, within BT0049 at 45.042 kb on - strand, within BT0049
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi remove 42,682 - +0.3 42,757 - -1.0 42,759 + -1.3 42,769 + +0.2 42,770 - -3.3 42,846 + BT0046 0.13 -0.0 42,878 - BT0046 0.17 +0.5 42,906 - BT0046 0.20 -0.6 42,907 + BT0046 0.20 -1.0 42,908 - BT0046 0.20 +0.5 43,161 + BT0046 0.47 +0.4 43,197 - BT0046 0.51 -2.3 43,197 - BT0046 0.51 -1.0 43,278 - BT0046 0.59 -0.3 43,325 + BT0046 0.64 +2.7 43,325 + BT0046 0.64 -0.4 43,326 - BT0046 0.65 -0.9 43,328 - BT0046 0.65 -1.4 43,341 - BT0046 0.66 -1.8 43,605 - -1.5 43,681 + +0.5 43,701 + -0.6 43,755 - BT0047 0.21 -1.2 43,774 + BT0047 0.26 +0.3 43,843 - BT0047 0.43 -2.2 43,858 - BT0047 0.47 -1.5 43,899 + BT0047 0.58 +1.5 43,899 + BT0047 0.58 -0.5 43,899 + BT0047 0.58 +1.5 43,957 - BT0047 0.72 -2.8 44,167 + +0.9 44,180 - -2.1 44,266 - BT0048 0.22 -0.6 44,315 - BT0048 0.32 -1.4 44,353 - BT0048 0.40 -1.5 44,376 - BT0048 0.45 +1.0 44,376 - BT0048 0.45 -2.2 44,409 + BT0048 0.52 +1.7 44,468 + BT0048 0.64 +1.1 44,510 - BT0048 0.73 -1.5 44,600 - -3.0 44,782 + BT0049 0.14 +1.0 44,784 + BT0049 0.15 -0.7 44,893 + BT0049 0.26 -0.0 44,978 - BT0049 0.35 -2.4 44,978 - BT0049 0.35 -0.8 44,978 - BT0049 0.35 -3.0 45,042 - BT0049 0.42 -0.5
Or see this region's nucleotide sequence