Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02154 and SMc04429 overlap by 4 nucleotides SMc04429 and SMc02153 are separated by 1 nucleotides
SMc02154: SMc02154 - hypothetical protein, at 551,813 to 554,713
SMc02154
SMc04429: SMc04429 - hypothetical protein, at 554,710 to 555,357
SMc04429
SMc02153: SMc02153 - hypothetical protein, at 555,359 to 556,690
SMc02153
Position (kb) 554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 553.770 kb on + strand, within SMc02154 at 553.771 kb on - strand, within SMc02154 at 553.771 kb on - strand, within SMc02154 at 553.800 kb on + strand, within SMc02154 at 553.800 kb on + strand, within SMc02154 at 553.801 kb on - strand, within SMc02154 at 553.801 kb on - strand, within SMc02154 at 553.801 kb on - strand, within SMc02154 at 553.886 kb on + strand, within SMc02154 at 553.887 kb on - strand, within SMc02154 at 553.892 kb on - strand, within SMc02154 at 553.892 kb on - strand, within SMc02154 at 553.919 kb on - strand, within SMc02154 at 553.919 kb on - strand, within SMc02154 at 553.942 kb on + strand, within SMc02154 at 553.943 kb on - strand, within SMc02154 at 554.040 kb on + strand, within SMc02154 at 554.041 kb on - strand, within SMc02154 at 554.041 kb on - strand, within SMc02154 at 554.043 kb on + strand, within SMc02154 at 554.044 kb on - strand, within SMc02154 at 554.044 kb on - strand, within SMc02154 at 554.208 kb on + strand, within SMc02154 at 554.209 kb on - strand, within SMc02154 at 554.209 kb on - strand, within SMc02154 at 554.209 kb on - strand, within SMc02154 at 554.425 kb on + strand at 554.696 kb on + strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.768 kb on + strand at 554.768 kb on + strand at 554.769 kb on - strand at 555.028 kb on + strand, within SMc04429 at 555.029 kb on - strand, within SMc04429 at 555.029 kb on - strand, within SMc04429 at 555.084 kb on + strand, within SMc04429 at 555.084 kb on + strand, within SMc04429 at 555.085 kb on - strand, within SMc04429 at 555.085 kb on - strand, within SMc04429 at 555.131 kb on - strand, within SMc04429 at 555.156 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.173 kb on - strand, within SMc04429 at 555.210 kb on - strand, within SMc04429 at 555.724 kb on + strand, within SMc02153 at 555.724 kb on + strand, within SMc02153 at 555.725 kb on - strand, within SMc02153 at 555.762 kb on - strand, within SMc02153 at 555.801 kb on - strand, within SMc02153 at 555.942 kb on - strand, within SMc02153 at 555.942 kb on - strand, within SMc02153 at 555.942 kb on - strand, within SMc02153 at 556.046 kb on + strand, within SMc02153 at 556.176 kb on + strand, within SMc02153 at 556.221 kb on + strand, within SMc02153 at 556.264 kb on - strand, within SMc02153 at 556.266 kb on + strand, within SMc02153 at 556.266 kb on + strand, within SMc02153 at 556.267 kb on - strand, within SMc02153 at 556.291 kb on + strand, within SMc02153 at 556.291 kb on + strand, within SMc02153
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 553,770 + SMc02154 0.67 -0.4 553,771 - SMc02154 0.67 -0.9 553,771 - SMc02154 0.67 -0.4 553,800 + SMc02154 0.68 -0.2 553,800 + SMc02154 0.68 +0.4 553,801 - SMc02154 0.69 +0.8 553,801 - SMc02154 0.69 -0.1 553,801 - SMc02154 0.69 -0.6 553,886 + SMc02154 0.71 +1.0 553,887 - SMc02154 0.71 -0.0 553,892 - SMc02154 0.72 -0.3 553,892 - SMc02154 0.72 -0.7 553,919 - SMc02154 0.73 +0.2 553,919 - SMc02154 0.73 -2.9 553,942 + SMc02154 0.73 -0.2 553,943 - SMc02154 0.73 +0.1 554,040 + SMc02154 0.77 -0.9 554,041 - SMc02154 0.77 +0.9 554,041 - SMc02154 0.77 -1.0 554,043 + SMc02154 0.77 +0.5 554,044 - SMc02154 0.77 -3.3 554,044 - SMc02154 0.77 +0.3 554,208 + SMc02154 0.83 -2.4 554,209 - SMc02154 0.83 +0.4 554,209 - SMc02154 0.83 +1.0 554,209 - SMc02154 0.83 +0.5 554,425 + -0.9 554,696 + +0.0 554,697 - +0.5 554,697 - -0.8 554,697 - -0.1 554,697 - -1.6 554,768 + -0.4 554,768 + -1.9 554,769 - +0.4 555,028 + SMc04429 0.49 +1.2 555,029 - SMc04429 0.49 -1.1 555,029 - SMc04429 0.49 +0.4 555,084 + SMc04429 0.58 +0.1 555,084 + SMc04429 0.58 +0.6 555,085 - SMc04429 0.58 +1.0 555,085 - SMc04429 0.58 +0.9 555,131 - SMc04429 0.65 +1.8 555,156 + SMc04429 0.69 +0.2 555,172 + SMc04429 0.71 +0.6 555,172 + SMc04429 0.71 -1.6 555,172 + SMc04429 0.71 +2.4 555,172 + SMc04429 0.71 -0.0 555,172 + SMc04429 0.71 +0.2 555,172 + SMc04429 0.71 +1.0 555,173 - SMc04429 0.71 +0.1 555,210 - SMc04429 0.77 -1.4 555,724 + SMc02153 0.27 -2.3 555,724 + SMc02153 0.27 +1.3 555,725 - SMc02153 0.27 -0.1 555,762 - SMc02153 0.30 +0.1 555,801 - SMc02153 0.33 +0.1 555,942 - SMc02153 0.44 +0.8 555,942 - SMc02153 0.44 +0.6 555,942 - SMc02153 0.44 -0.1 556,046 + SMc02153 0.52 -2.2 556,176 + SMc02153 0.61 +1.6 556,221 + SMc02153 0.65 +0.8 556,264 - SMc02153 0.68 -2.0 556,266 + SMc02153 0.68 +1.1 556,266 + SMc02153 0.68 +0.3 556,267 - SMc02153 0.68 -0.4 556,291 + SMc02153 0.70 +0.2 556,291 + SMc02153 0.70 +0.3
Or see this region's nucleotide sequence