Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04299 and SMc04300 are separated by 158 nucleotides SMc04300 and SMc04316 overlap by 13 nucleotides
SMc04299: SMc04299 - hypothetical protein, at 2,215,614 to 2,217,326
SMc04299
SMc04300: SMc04300 - iron ABC transporter ATP-binding protein, at 2,217,485 to 2,218,525
SMc04300
SMc04316: SMc04316 - iron ABC transporter permease, at 2,218,513 to 2,220,549
SMc04316
Position (kb)
2217
2218
2219 Strain fitness (log2 ratio)
-2
-1
0
1 at 2216.488 kb on - strand, within SMc04299 at 2216.514 kb on + strand, within SMc04299 at 2216.662 kb on + strand, within SMc04299 at 2216.662 kb on + strand, within SMc04299 at 2216.663 kb on - strand, within SMc04299 at 2216.663 kb on - strand, within SMc04299 at 2217.113 kb on + strand, within SMc04299 at 2217.115 kb on + strand, within SMc04299 at 2217.116 kb on - strand, within SMc04299 at 2217.116 kb on - strand, within SMc04299 at 2217.278 kb on - strand at 2217.278 kb on - strand at 2217.299 kb on - strand at 2217.322 kb on + strand at 2217.322 kb on + strand at 2217.322 kb on + strand at 2217.323 kb on - strand at 2217.323 kb on - strand at 2217.323 kb on - strand at 2217.386 kb on - strand at 2217.530 kb on - strand at 2217.531 kb on + strand at 2217.532 kb on - strand at 2217.532 kb on - strand at 2217.532 kb on - strand at 2217.832 kb on - strand, within SMc04300 at 2217.930 kb on + strand, within SMc04300 at 2217.930 kb on + strand, within SMc04300 at 2217.930 kb on + strand, within SMc04300 at 2217.930 kb on + strand, within SMc04300 at 2217.930 kb on + strand, within SMc04300 at 2217.931 kb on - strand, within SMc04300 at 2217.931 kb on - strand, within SMc04300 at 2218.098 kb on - strand, within SMc04300 at 2218.098 kb on - strand, within SMc04300 at 2218.245 kb on + strand, within SMc04300 at 2218.904 kb on + strand, within SMc04316 at 2218.904 kb on + strand, within SMc04316 at 2218.904 kb on + strand, within SMc04316 at 2218.934 kb on + strand, within SMc04316 at 2219.078 kb on + strand, within SMc04316 at 2219.089 kb on + strand, within SMc04316 at 2219.179 kb on + strand, within SMc04316 at 2219.179 kb on + strand, within SMc04316 at 2219.179 kb on + strand, within SMc04316 at 2219.180 kb on - strand, within SMc04316 at 2219.180 kb on - strand, within SMc04316 at 2219.189 kb on + strand, within SMc04316 at 2219.232 kb on - strand, within SMc04316
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 2,216,488 - SMc04299 0.51 -0.5 2,216,514 + SMc04299 0.53 +0.8 2,216,662 + SMc04299 0.61 +0.9 2,216,662 + SMc04299 0.61 -0.1 2,216,663 - SMc04299 0.61 -0.4 2,216,663 - SMc04299 0.61 -0.2 2,217,113 + SMc04299 0.88 +0.9 2,217,115 + SMc04299 0.88 -0.7 2,217,116 - SMc04299 0.88 +0.6 2,217,116 - SMc04299 0.88 +0.1 2,217,278 - +1.6 2,217,278 - -1.5 2,217,299 - +1.5 2,217,322 + +0.6 2,217,322 + +0.2 2,217,322 + -0.2 2,217,323 - +1.0 2,217,323 - -0.9 2,217,323 - -1.5 2,217,386 - +0.0 2,217,530 - +0.3 2,217,531 + -1.3 2,217,532 - +0.8 2,217,532 - -0.4 2,217,532 - +0.5 2,217,832 - SMc04300 0.33 -1.3 2,217,930 + SMc04300 0.43 -1.5 2,217,930 + SMc04300 0.43 -0.9 2,217,930 + SMc04300 0.43 -1.1 2,217,930 + SMc04300 0.43 -2.6 2,217,930 + SMc04300 0.43 +1.0 2,217,931 - SMc04300 0.43 -0.7 2,217,931 - SMc04300 0.43 +0.3 2,218,098 - SMc04300 0.59 -0.1 2,218,098 - SMc04300 0.59 -0.5 2,218,245 + SMc04300 0.73 -0.5 2,218,904 + SMc04316 0.19 +0.3 2,218,904 + SMc04316 0.19 +0.7 2,218,904 + SMc04316 0.19 -0.7 2,218,934 + SMc04316 0.21 +0.8 2,219,078 + SMc04316 0.28 +1.0 2,219,089 + SMc04316 0.28 -0.3 2,219,179 + SMc04316 0.33 -0.1 2,219,179 + SMc04316 0.33 +0.7 2,219,179 + SMc04316 0.33 +0.6 2,219,180 - SMc04316 0.33 +1.0 2,219,180 - SMc04316 0.33 +0.6 2,219,189 + SMc04316 0.33 -1.7 2,219,232 - SMc04316 0.35 -0.5
Or see this region's nucleotide sequence