Strain Fitness in Sinorhizobium meliloti 1021 around SMc04300

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04299 and SMc04300 are separated by 158 nucleotidesSMc04300 and SMc04316 overlap by 13 nucleotides SMc04299: SMc04299 - hypothetical protein, at 2,215,614 to 2,217,326 SMc04299 SMc04300: SMc04300 - iron ABC transporter ATP-binding protein, at 2,217,485 to 2,218,525 SMc04300 SMc04316: SMc04316 - iron ABC transporter permease, at 2,218,513 to 2,220,549 SMc04316 Position (kb) 2217 2218 2219Strain fitness (log2 ratio) -2 -1 0 1at 2216.488 kb on - strand, within SMc04299at 2216.514 kb on + strand, within SMc04299at 2216.662 kb on + strand, within SMc04299at 2216.662 kb on + strand, within SMc04299at 2216.663 kb on - strand, within SMc04299at 2216.663 kb on - strand, within SMc04299at 2217.113 kb on + strand, within SMc04299at 2217.115 kb on + strand, within SMc04299at 2217.116 kb on - strand, within SMc04299at 2217.116 kb on - strand, within SMc04299at 2217.278 kb on - strandat 2217.278 kb on - strandat 2217.299 kb on - strandat 2217.322 kb on + strandat 2217.322 kb on + strandat 2217.322 kb on + strandat 2217.323 kb on - strandat 2217.323 kb on - strandat 2217.323 kb on - strandat 2217.386 kb on - strandat 2217.530 kb on - strandat 2217.531 kb on + strandat 2217.532 kb on - strandat 2217.532 kb on - strandat 2217.532 kb on - strandat 2217.832 kb on - strand, within SMc04300at 2217.930 kb on + strand, within SMc04300at 2217.930 kb on + strand, within SMc04300at 2217.930 kb on + strand, within SMc04300at 2217.930 kb on + strand, within SMc04300at 2217.930 kb on + strand, within SMc04300at 2217.931 kb on - strand, within SMc04300at 2217.931 kb on - strand, within SMc04300at 2218.098 kb on - strand, within SMc04300at 2218.098 kb on - strand, within SMc04300at 2218.245 kb on + strand, within SMc04300at 2218.904 kb on + strand, within SMc04316at 2218.904 kb on + strand, within SMc04316at 2218.904 kb on + strand, within SMc04316at 2218.934 kb on + strand, within SMc04316at 2219.078 kb on + strand, within SMc04316at 2219.089 kb on + strand, within SMc04316at 2219.179 kb on + strand, within SMc04316at 2219.179 kb on + strand, within SMc04316at 2219.179 kb on + strand, within SMc04316at 2219.180 kb on - strand, within SMc04316at 2219.180 kb on - strand, within SMc04316at 2219.189 kb on + strand, within SMc04316at 2219.232 kb on - strand, within SMc04316

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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2,216,488 - SMc04299 0.51 -0.5
2,216,514 + SMc04299 0.53 +0.8
2,216,662 + SMc04299 0.61 +0.9
2,216,662 + SMc04299 0.61 -0.1
2,216,663 - SMc04299 0.61 -0.4
2,216,663 - SMc04299 0.61 -0.2
2,217,113 + SMc04299 0.88 +0.9
2,217,115 + SMc04299 0.88 -0.7
2,217,116 - SMc04299 0.88 +0.6
2,217,116 - SMc04299 0.88 +0.1
2,217,278 - +1.6
2,217,278 - -1.5
2,217,299 - +1.5
2,217,322 + +0.6
2,217,322 + +0.2
2,217,322 + -0.2
2,217,323 - +1.0
2,217,323 - -0.9
2,217,323 - -1.5
2,217,386 - +0.0
2,217,530 - +0.3
2,217,531 + -1.3
2,217,532 - +0.8
2,217,532 - -0.4
2,217,532 - +0.5
2,217,832 - SMc04300 0.33 -1.3
2,217,930 + SMc04300 0.43 -1.5
2,217,930 + SMc04300 0.43 -0.9
2,217,930 + SMc04300 0.43 -1.1
2,217,930 + SMc04300 0.43 -2.6
2,217,930 + SMc04300 0.43 +1.0
2,217,931 - SMc04300 0.43 -0.7
2,217,931 - SMc04300 0.43 +0.3
2,218,098 - SMc04300 0.59 -0.1
2,218,098 - SMc04300 0.59 -0.5
2,218,245 + SMc04300 0.73 -0.5
2,218,904 + SMc04316 0.19 +0.3
2,218,904 + SMc04316 0.19 +0.7
2,218,904 + SMc04316 0.19 -0.7
2,218,934 + SMc04316 0.21 +0.8
2,219,078 + SMc04316 0.28 +1.0
2,219,089 + SMc04316 0.28 -0.3
2,219,179 + SMc04316 0.33 -0.1
2,219,179 + SMc04316 0.33 +0.7
2,219,179 + SMc04316 0.33 +0.6
2,219,180 - SMc04316 0.33 +1.0
2,219,180 - SMc04316 0.33 +0.6
2,219,189 + SMc04316 0.33 -1.7
2,219,232 - SMc04316 0.35 -0.5

Or see this region's nucleotide sequence