Strain Fitness in Sinorhizobium meliloti 1021 around SMc04298
Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.3 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,214,859 | + | SMc04296 | 0.71 | -2.2 | |
2,214,860 | - | SMc04296 | 0.71 | -1.0 | |
2,215,214 | - | -0.6 | |||
2,215,248 | - | +0.5 | |||
2,215,306 | + | -2.3 | |||
2,215,306 | + | -0.9 | |||
2,215,307 | - | -0.8 | |||
2,215,492 | + | SMc04298 | 0.56 | -1.9 | |
2,215,492 | + | +2.7 | |||
2,215,492 | + | SMc04298 | 0.56 | -1.2 | |
2,215,710 | + | +0.8 | |||
2,215,710 | + | +0.8 | |||
2,215,711 | - | -0.6 | |||
2,215,711 | - | +1.1 | |||
2,215,711 | - | +0.0 | |||
2,215,711 | - | +1.8 | |||
2,215,813 | - | SMc04299 | 0.12 | +0.3 | |
2,215,925 | - | SMc04299 | 0.18 | +0.2 | |
2,215,934 | + | SMc04299 | 0.19 | +1.7 | |
2,215,934 | + | SMc04299 | 0.19 | -0.0 | |
2,216,076 | + | SMc04299 | 0.27 | -1.4 | |
2,216,077 | - | SMc04299 | 0.27 | +0.2 | |
2,216,089 | - | SMc04299 | 0.28 | -0.7 | |
2,216,467 | + | SMc04299 | 0.50 | -1.6 | |
2,216,467 | + | SMc04299 | 0.50 | +0.3 | |
2,216,468 | - | SMc04299 | 0.50 | -0.7 | |
2,216,468 | - | SMc04299 | 0.50 | -1.3 | |
2,216,468 | - | SMc04299 | 0.50 | +2.7 | |
2,216,488 | - | SMc04299 | 0.51 | -0.5 | |
2,216,514 | + | SMc04299 | 0.53 | +0.8 |
Or see this region's nucleotide sequence