Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04234 and SMc04235 are separated by 127 nucleotides SMc04235 and SMc04236 are separated by 446 nucleotides
SMc04234: SMc04234 - cold shock-like transcription regulator protein, at 2,061,342 to 2,061,554
SMc04234
SMc04235: SMc04235 - tRNA-dihydrouridine synthase A, at 2,061,682 to 2,062,761
SMc04235
SMc04236: SMc04236 - glycine-rich cell wall structural transmembrane protein, at 2,063,208 to 2,063,960
SMc04236
Position (kb)
2061
2062
2063 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2060.791 kb on - strand at 2060.812 kb on + strand at 2060.893 kb on + strand at 2060.894 kb on - strand at 2060.909 kb on - strand at 2061.016 kb on + strand at 2061.016 kb on + strand at 2061.683 kb on + strand at 2061.683 kb on + strand at 2061.683 kb on + strand at 2061.784 kb on + strand at 2061.784 kb on + strand at 2061.785 kb on - strand at 2061.785 kb on - strand at 2061.794 kb on + strand, within SMc04235 at 2061.874 kb on - strand, within SMc04235 at 2061.887 kb on + strand, within SMc04235 at 2061.887 kb on + strand, within SMc04235 at 2061.936 kb on + strand, within SMc04235 at 2061.936 kb on + strand, within SMc04235 at 2061.936 kb on + strand, within SMc04235 at 2061.937 kb on - strand, within SMc04235 at 2062.007 kb on + strand, within SMc04235 at 2062.360 kb on + strand, within SMc04235 at 2062.360 kb on + strand, within SMc04235 at 2062.361 kb on - strand, within SMc04235 at 2062.695 kb on - strand at 2062.892 kb on + strand at 2062.918 kb on + strand at 2062.919 kb on - strand at 2063.121 kb on + strand at 2063.182 kb on + strand at 2063.182 kb on + strand at 2063.214 kb on - strand at 2063.257 kb on - strand at 2063.284 kb on + strand, within SMc04236 at 2063.316 kb on - strand, within SMc04236 at 2063.439 kb on - strand, within SMc04236
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 2,060,791 - -1.1 2,060,812 + +0.3 2,060,893 + -2.4 2,060,894 - +2.2 2,060,909 - -1.2 2,061,016 + -2.9 2,061,016 + -1.4 2,061,683 + +0.8 2,061,683 + +0.0 2,061,683 + +0.3 2,061,784 + +0.9 2,061,784 + -2.4 2,061,785 - +1.4 2,061,785 - +1.1 2,061,794 + SMc04235 0.10 +2.4 2,061,874 - SMc04235 0.18 +1.2 2,061,887 + SMc04235 0.19 +1.9 2,061,887 + SMc04235 0.19 +2.4 2,061,936 + SMc04235 0.24 -0.2 2,061,936 + SMc04235 0.24 +1.6 2,061,936 + SMc04235 0.24 -1.2 2,061,937 - SMc04235 0.24 +1.2 2,062,007 + SMc04235 0.30 +0.7 2,062,360 + SMc04235 0.63 +1.4 2,062,360 + SMc04235 0.63 -0.2 2,062,361 - SMc04235 0.63 +2.8 2,062,695 - +1.7 2,062,892 + +1.2 2,062,918 + +0.5 2,062,919 - -1.6 2,063,121 + +0.3 2,063,182 + +0.2 2,063,182 + -0.2 2,063,214 - +1.8 2,063,257 - +0.7 2,063,284 + SMc04236 0.10 +0.6 2,063,316 - SMc04236 0.14 -0.4 2,063,439 - SMc04236 0.31 +1.0
Or see this region's nucleotide sequence