Strain Fitness in Sinorhizobium meliloti 1021 around SMc03871

Experiment: Paraquat dichloride 0.3 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03870 and SMc03871 overlap by 4 nucleotidesSMc03871 and SMc03872 are separated by 339 nucleotides SMc03870: SMc03870 - thiamine transporter membrane protein, at 3,534,087 to 3,535,694 SMc03870 SMc03871: SMc03871 - ABC transporter ATP-binding protein, at 3,535,691 to 3,536,407 SMc03871 SMc03872: SMc03872 - hypothetical protein, at 3,536,747 to 3,538,240 SMc03872 Position (kb) 3535 3536 3537Strain fitness (log2 ratio) -2 -1 0 1 2at 3534.750 kb on + strand, within SMc03870at 3534.751 kb on - strand, within SMc03870at 3534.950 kb on - strand, within SMc03870at 3534.995 kb on + strand, within SMc03870at 3535.210 kb on + strand, within SMc03870at 3535.211 kb on - strand, within SMc03870at 3535.564 kb on - strandat 3535.581 kb on + strandat 3535.582 kb on - strandat 3535.682 kb on + strandat 3535.683 kb on - strandat 3535.728 kb on + strandat 3535.930 kb on - strand, within SMc03871at 3535.942 kb on + strand, within SMc03871at 3535.942 kb on + strand, within SMc03871at 3535.942 kb on + strand, within SMc03871at 3535.943 kb on - strand, within SMc03871at 3535.943 kb on - strand, within SMc03871at 3536.251 kb on - strand, within SMc03871at 3536.411 kb on - strandat 3536.411 kb on - strandat 3536.509 kb on + strandat 3536.563 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
remove
3,534,750 + SMc03870 0.41 -0.8
3,534,751 - SMc03870 0.41 -0.0
3,534,950 - SMc03870 0.54 +0.1
3,534,995 + SMc03870 0.56 -0.3
3,535,210 + SMc03870 0.70 -0.2
3,535,211 - SMc03870 0.70 -2.4
3,535,564 - +0.5
3,535,581 + -1.1
3,535,582 - +0.8
3,535,682 + -1.1
3,535,683 - -1.2
3,535,728 + -1.8
3,535,930 - SMc03871 0.33 +1.2
3,535,942 + SMc03871 0.35 +1.8
3,535,942 + SMc03871 0.35 +0.4
3,535,942 + SMc03871 0.35 -0.2
3,535,943 - SMc03871 0.35 +0.7
3,535,943 - SMc03871 0.35 -0.4
3,536,251 - SMc03871 0.78 -1.0
3,536,411 - +0.4
3,536,411 - -0.2
3,536,509 + -1.4
3,536,563 - -1.1

Or see this region's nucleotide sequence