Strain Fitness in Sinorhizobium meliloti 1021 around SMc03811

Experiment: Paraquat dichloride 0.3 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03810 and SMc03811 overlap by 4 nucleotidesSMc03811 and SMc03812 overlap by 1 nucleotides SMc03810: SMc03810 - hypothetical protein, at 3,476,946 to 3,477,755 SMc03810 SMc03811: SMc03811 - hypothetical protein, at 3,477,752 to 3,478,582 SMc03811 SMc03812: SMc03812 - oxidoreductase, at 3,478,582 to 3,479,658 SMc03812 Position (kb) 3477 3478 3479Strain fitness (log2 ratio) -2 -1 0 1at 3476.810 kb on - strandat 3476.959 kb on + strandat 3477.001 kb on + strandat 3477.365 kb on + strand, within SMc03810at 3477.366 kb on - strand, within SMc03810at 3477.518 kb on - strand, within SMc03810at 3477.871 kb on - strand, within SMc03811at 3477.880 kb on - strand, within SMc03811at 3478.368 kb on + strand, within SMc03811at 3478.368 kb on + strand, within SMc03811at 3478.369 kb on - strand, within SMc03811at 3478.369 kb on - strand, within SMc03811at 3478.748 kb on + strand, within SMc03812at 3478.749 kb on - strand, within SMc03812at 3478.749 kb on - strand, within SMc03812at 3478.827 kb on - strand, within SMc03812at 3478.827 kb on - strand, within SMc03812at 3478.827 kb on - strand, within SMc03812at 3478.829 kb on + strand, within SMc03812at 3478.839 kb on + strand, within SMc03812at 3478.840 kb on - strand, within SMc03812at 3478.840 kb on - strand, within SMc03812at 3478.841 kb on + strand, within SMc03812at 3478.841 kb on + strand, within SMc03812at 3478.842 kb on - strand, within SMc03812at 3478.842 kb on - strand, within SMc03812at 3478.842 kb on - strandat 3478.842 kb on - strand, within SMc03812at 3479.030 kb on + strand, within SMc03812at 3479.031 kb on - strand, within SMc03812at 3479.031 kb on - strand, within SMc03812at 3479.072 kb on + strand, within SMc03812at 3479.072 kb on + strand, within SMc03812at 3479.072 kb on + strand, within SMc03812at 3479.073 kb on - strand, within SMc03812at 3479.073 kb on - strand, within SMc03812at 3479.075 kb on + strand, within SMc03812at 3479.165 kb on + strand, within SMc03812at 3479.186 kb on + strand, within SMc03812at 3479.481 kb on - strand, within SMc03812at 3479.545 kb on - strand, within SMc03812at 3479.545 kb on - strand, within SMc03812

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
remove
3,476,810 - -1.2
3,476,959 + -2.2
3,477,001 + +1.4
3,477,365 + SMc03810 0.52 +0.2
3,477,366 - SMc03810 0.52 -0.4
3,477,518 - SMc03810 0.71 -1.0
3,477,871 - SMc03811 0.14 +0.8
3,477,880 - SMc03811 0.15 +0.5
3,478,368 + SMc03811 0.74 +0.8
3,478,368 + SMc03811 0.74 -0.4
3,478,369 - SMc03811 0.74 +0.8
3,478,369 - SMc03811 0.74 -0.2
3,478,748 + SMc03812 0.15 +0.4
3,478,749 - SMc03812 0.16 -2.4
3,478,749 - SMc03812 0.16 -2.0
3,478,827 - SMc03812 0.23 -1.1
3,478,827 - SMc03812 0.23 +0.3
3,478,827 - SMc03812 0.23 -2.2
3,478,829 + SMc03812 0.23 +0.6
3,478,839 + SMc03812 0.24 -0.9
3,478,840 - SMc03812 0.24 -0.9
3,478,840 - SMc03812 0.24 -0.8
3,478,841 + SMc03812 0.24 -0.7
3,478,841 + SMc03812 0.24 -0.0
3,478,842 - SMc03812 0.24 -1.9
3,478,842 - SMc03812 0.24 -0.9
3,478,842 - +0.8
3,478,842 - SMc03812 0.24 -0.6
3,479,030 + SMc03812 0.42 +0.1
3,479,031 - SMc03812 0.42 +0.8
3,479,031 - SMc03812 0.42 -0.9
3,479,072 + SMc03812 0.45 +0.8
3,479,072 + SMc03812 0.45 -0.1
3,479,072 + SMc03812 0.45 +0.0
3,479,073 - SMc03812 0.46 +1.6
3,479,073 - SMc03812 0.46 +0.0
3,479,075 + SMc03812 0.46 +0.4
3,479,165 + SMc03812 0.54 -0.8
3,479,186 + SMc03812 0.56 -0.4
3,479,481 - SMc03812 0.83 -0.9
3,479,545 - SMc03812 0.89 -0.3
3,479,545 - SMc03812 0.89 -0.9

Or see this region's nucleotide sequence