Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03007 and SMc03008 are separated by 5 nucleotides SMc03008 and SMc03009 overlap by 4 nucleotides SMc03009 and SMc03010 overlap by 4 nucleotides
SMc03007: SMc03007 - chemotaxis protein (sensory transduction histidine kinase), at 704,482 to 706,758
SMc03007
SMc03008: SMc03008 - chemotaxis protein, at 706,764 to 707,231
SMc03008
SMc03009: SMc03009 - chemotaxis protein methyltransferase, at 707,228 to 708,136
SMc03009
SMc03010: SMc03010 - chemotaxis-specific methylesterase, at 708,133 to 709,182
SMc03010
Position (kb) 706
707
708 Strain fitness (log2 ratio) -2
-1
0
1 at 705.849 kb on + strand, within SMc03007 at 705.850 kb on - strand, within SMc03007 at 706.596 kb on - strand at 706.596 kb on - strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.619 kb on - strand at 706.619 kb on - strand at 706.689 kb on - strand at 707.161 kb on + strand, within SMc03008 at 707.185 kb on + strand at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.385 kb on - strand, within SMc03009 at 707.575 kb on + strand, within SMc03009 at 707.693 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.032 kb on - strand, within SMc03009 at 708.099 kb on - strand at 708.222 kb on + strand at 708.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 705,849 + SMc03007 0.60 -1.0 705,850 - SMc03007 0.60 -0.1 706,596 - -0.2 706,596 - -1.8 706,618 + +0.5 706,618 + -2.0 706,618 + -2.4 706,618 + -0.4 706,618 + -0.7 706,619 - +0.3 706,619 - -0.6 706,689 - +0.2 707,161 + SMc03008 0.85 +0.8 707,185 + +1.7 707,336 + SMc03009 0.12 +0.8 707,336 + SMc03009 0.12 -1.4 707,336 + SMc03009 0.12 +0.7 707,355 - SMc03009 0.14 +0.6 707,355 - SMc03009 0.14 -0.2 707,385 - SMc03009 0.17 +0.2 707,575 + SMc03009 0.38 +0.3 707,693 + SMc03009 0.51 +0.3 708,029 + SMc03009 0.88 +0.4 708,029 + SMc03009 0.88 -0.5 708,029 + SMc03009 0.88 -0.1 708,032 - SMc03009 0.88 -0.3 708,099 - +1.0 708,222 + +0.8 708,223 - -2.5
Or see this region's nucleotide sequence