Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02875 and SMc02876 overlap by 4 nucleotides SMc02876 and SMc02877 are separated by 93 nucleotides
SMc02875: SMc02875 - N-acetylglucosamine kinase (EC 2.7.1.59) <small>(from data)</small>, at 231,331 to 232,215
SMc02875
SMc02876: SMc02876 - transcriptional regulator, at 232,212 to 232,976
SMc02876
SMc02877: SMc02877 - hypothetical protein, at 233,070 to 234,092
SMc02877
Position (kb) 232
233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 231.250 kb on + strand at 231.386 kb on + strand at 231.438 kb on + strand, within SMc02875 at 231.445 kb on - strand, within SMc02875 at 231.473 kb on + strand, within SMc02875 at 231.586 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.707 kb on - strand, within SMc02875 at 231.707 kb on - strand, within SMc02875 at 231.736 kb on + strand, within SMc02875 at 231.737 kb on - strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.834 kb on - strand, within SMc02875 at 232.938 kb on + strand at 233.020 kb on + strand at 233.048 kb on + strand at 233.528 kb on + strand, within SMc02877 at 233.528 kb on + strand, within SMc02877 at 233.682 kb on + strand, within SMc02877 at 233.682 kb on + strand, within SMc02877
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 231,250 + +0.5 231,386 + -0.0 231,438 + SMc02875 0.12 +0.9 231,445 - SMc02875 0.13 -2.3 231,473 + SMc02875 0.16 -0.5 231,586 + SMc02875 0.29 -0.2 231,706 + SMc02875 0.42 -0.0 231,706 + SMc02875 0.42 -0.6 231,706 + SMc02875 0.42 -0.9 231,707 - SMc02875 0.42 +0.4 231,707 - SMc02875 0.42 -0.2 231,736 + SMc02875 0.46 -0.7 231,737 - SMc02875 0.46 -2.0 231,833 + SMc02875 0.57 -0.7 231,833 + SMc02875 0.57 -1.0 231,833 + SMc02875 0.57 -0.2 231,833 + SMc02875 0.57 +0.3 231,833 + SMc02875 0.57 -0.3 231,834 - SMc02875 0.57 -0.8 232,938 + -1.6 233,020 + +0.6 233,048 + +1.2 233,528 + SMc02877 0.45 +2.0 233,528 + SMc02877 0.45 +0.6 233,682 + SMc02877 0.60 +0.2 233,682 + SMc02877 0.60 +0.5
Or see this region's nucleotide sequence