Strain Fitness in Sinorhizobium meliloti 1021 around SMc02871

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02870 and SMc02871 overlap by 4 nucleotidesSMc02871 and SMc02872 are separated by 12 nucleotides SMc02870: SMc02870 - oxidoreductase, at 225,791 to 226,855 SMc02870 SMc02871: SMc02871 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 2 (from data), at 226,852 to 227,691 SMc02871 SMc02872: SMc02872 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 1 (from data), at 227,704 to 228,651 SMc02872 Position (kb) 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 226.171 kb on - strand, within SMc02870at 226.216 kb on - strand, within SMc02870at 226.221 kb on + strand, within SMc02870at 226.221 kb on + strand, within SMc02870at 226.222 kb on - strand, within SMc02870at 226.314 kb on + strand, within SMc02870at 226.314 kb on + strand, within SMc02870at 226.315 kb on - strand, within SMc02870at 226.419 kb on + strand, within SMc02870at 226.419 kb on + strand, within SMc02870at 226.420 kb on - strand, within SMc02870at 226.483 kb on + strand, within SMc02870at 226.483 kb on + strand, within SMc02870at 226.632 kb on + strand, within SMc02870at 226.633 kb on - strand, within SMc02870at 226.633 kb on - strand, within SMc02870at 226.779 kb on + strandat 226.804 kb on + strandat 226.805 kb on - strandat 226.907 kb on + strandat 226.907 kb on + strandat 227.219 kb on - strand, within SMc02871at 227.246 kb on + strand, within SMc02871at 227.246 kb on + strand, within SMc02871at 227.246 kb on + strand, within SMc02871at 227.247 kb on - strand, within SMc02871at 227.272 kb on - strand, within SMc02871at 227.354 kb on + strand, within SMc02871at 227.355 kb on - strand, within SMc02871at 227.355 kb on - strand, within SMc02871at 227.355 kb on - strand, within SMc02871at 227.474 kb on + strand, within SMc02871at 227.631 kb on - strandat 227.631 kb on - strandat 227.696 kb on + strandat 227.697 kb on - strandat 227.697 kb on - strandat 227.705 kb on + strandat 227.706 kb on - strandat 227.706 kb on - strandat 227.734 kb on + strandat 227.735 kb on - strandat 227.748 kb on - strandat 227.748 kb on - strandat 227.748 kb on - strandat 227.912 kb on + strand, within SMc02872at 227.913 kb on - strand, within SMc02872at 227.913 kb on - strandat 227.913 kb on - strand, within SMc02872at 228.080 kb on + strand, within SMc02872at 228.105 kb on + strand, within SMc02872at 228.106 kb on - strand, within SMc02872at 228.107 kb on + strand, within SMc02872at 228.107 kb on + strand, within SMc02872at 228.107 kb on + strand, within SMc02872at 228.108 kb on - strand, within SMc02872at 228.108 kb on - strand, within SMc02872at 228.206 kb on + strand, within SMc02872at 228.206 kb on + strand, within SMc02872at 228.207 kb on - strand, within SMc02872at 228.207 kb on - strand, within SMc02872at 228.291 kb on + strand, within SMc02872at 228.302 kb on + strand, within SMc02872at 228.506 kb on + strand, within SMc02872at 228.506 kb on + strand, within SMc02872at 228.506 kb on + strand, within SMc02872at 228.507 kb on - strand, within SMc02872at 228.626 kb on + strandat 228.626 kb on + strandat 228.626 kb on + strandat 228.626 kb on + strandat 228.627 kb on - strandat 228.627 kb on - strandat 228.627 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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226,171 - SMc02870 0.36 +0.4
226,216 - SMc02870 0.40 -0.5
226,221 + SMc02870 0.40 +0.4
226,221 + SMc02870 0.40 -0.8
226,222 - SMc02870 0.40 +0.5
226,314 + SMc02870 0.49 -0.0
226,314 + SMc02870 0.49 +0.2
226,315 - SMc02870 0.49 +1.2
226,419 + SMc02870 0.59 -0.2
226,419 + SMc02870 0.59 -0.1
226,420 - SMc02870 0.59 -0.0
226,483 + SMc02870 0.65 +1.3
226,483 + SMc02870 0.65 +0.6
226,632 + SMc02870 0.79 -0.2
226,633 - SMc02870 0.79 -0.0
226,633 - SMc02870 0.79 +0.2
226,779 + -1.4
226,804 + -0.9
226,805 - +1.1
226,907 + +0.5
226,907 + -0.1
227,219 - SMc02871 0.44 +1.5
227,246 + SMc02871 0.47 +0.3
227,246 + SMc02871 0.47 +0.3
227,246 + SMc02871 0.47 -1.0
227,247 - SMc02871 0.47 +0.4
227,272 - SMc02871 0.50 +0.6
227,354 + SMc02871 0.60 -0.6
227,355 - SMc02871 0.60 +1.1
227,355 - SMc02871 0.60 -1.0
227,355 - SMc02871 0.60 +1.6
227,474 + SMc02871 0.74 +0.3
227,631 - -0.6
227,631 - +1.4
227,696 + +0.2
227,697 - -0.7
227,697 - +1.4
227,705 + +0.5
227,706 - -0.6
227,706 - +0.2
227,734 + -0.5
227,735 - +1.2
227,748 - +0.9
227,748 - -1.0
227,748 - +1.3
227,912 + SMc02872 0.22 -0.7
227,913 - SMc02872 0.22 -0.3
227,913 - +0.9
227,913 - SMc02872 0.22 -0.1
228,080 + SMc02872 0.40 -1.1
228,105 + SMc02872 0.42 +0.3
228,106 - SMc02872 0.42 +1.2
228,107 + SMc02872 0.43 -1.5
228,107 + SMc02872 0.43 -3.0
228,107 + SMc02872 0.43 +0.3
228,108 - SMc02872 0.43 +0.6
228,108 - SMc02872 0.43 -1.2
228,206 + SMc02872 0.53 +0.5
228,206 + SMc02872 0.53 +0.5
228,207 - SMc02872 0.53 +0.5
228,207 - SMc02872 0.53 +2.1
228,291 + SMc02872 0.62 +0.5
228,302 + SMc02872 0.63 +0.4
228,506 + SMc02872 0.85 +0.1
228,506 + SMc02872 0.85 -0.2
228,506 + SMc02872 0.85 +0.2
228,507 - SMc02872 0.85 -2.0
228,626 + -0.3
228,626 + -0.9
228,626 + -0.7
228,626 + +0.2
228,627 - +1.5
228,627 - -0.7
228,627 - +0.5

Or see this region's nucleotide sequence