Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02863 and SMc02864 are separated by 38 nucleotides SMc02864 and SMc02865 are separated by 7 nucleotides SMc02865 and SMc02866 overlap by 8 nucleotides
SMc02863: SMc02863 - recombination protein F, at 216,797 to 217,921
SMc02863
SMc02864: SMc02864 - molybdopterin biosynthesis protein MoeB, at 217,960 to 218,724
SMc02864
SMc02865: SMc02865 - acetyltransferase, at 218,732 to 219,202
SMc02865
SMc02866: SMc02866 - transcriptional regulator, at 219,195 to 219,845
SMc02866
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 217.157 kb on - strand, within SMc02863 at 217.536 kb on - strand, within SMc02863 at 217.723 kb on + strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.724 kb on - strand, within SMc02863 at 217.886 kb on + strand at 217.886 kb on + strand at 217.886 kb on + strand at 218.332 kb on + strand, within SMc02864 at 218.332 kb on + strand, within SMc02864 at 218.333 kb on - strand, within SMc02864 at 218.367 kb on + strand, within SMc02864 at 218.375 kb on - strand, within SMc02864 at 218.570 kb on + strand, within SMc02864 at 218.669 kb on - strand at 218.669 kb on - strand at 218.960 kb on + strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 219.007 kb on - strand, within SMc02865 at 219.497 kb on - strand, within SMc02866 at 219.703 kb on + strand, within SMc02866
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 217,157 - SMc02863 0.32 -2.2 217,536 - SMc02863 0.66 -0.4 217,723 + SMc02863 0.82 -1.9 217,724 - SMc02863 0.82 -0.9 217,724 - SMc02863 0.82 -1.7 217,724 - SMc02863 0.82 +0.3 217,886 + -2.2 217,886 + +1.1 217,886 + -0.0 218,332 + SMc02864 0.49 +0.7 218,332 + SMc02864 0.49 -2.8 218,333 - SMc02864 0.49 +0.5 218,367 + SMc02864 0.53 +1.8 218,375 - SMc02864 0.54 +1.0 218,570 + SMc02864 0.80 -0.2 218,669 - +0.2 218,669 - -1.5 218,960 + SMc02865 0.48 +0.4 218,961 - SMc02865 0.49 -2.2 218,961 - SMc02865 0.49 -0.6 219,007 - SMc02865 0.58 -1.3 219,497 - SMc02866 0.46 -0.2 219,703 + SMc02866 0.78 -0.7
Or see this region's nucleotide sequence