Strain Fitness in Sinorhizobium meliloti 1021 around SMc02851

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02850 and SMc02851 are separated by 472 nucleotidesSMc02851 and SMc02852 are separated by 98 nucleotides SMc02850: SMc02850 - DNA polymerase I, at 198,469 to 201,483 SMc02850 SMc02851: SMc02851 - transcriptional regulator, at 201,956 to 202,399 SMc02851 SMc02852: SMc02852 - hypothetical protein, at 202,498 to 203,892 SMc02852 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1 2at 201.542 kb on + strandat 201.543 kb on - strandat 201.545 kb on + strandat 201.546 kb on - strandat 201.546 kb on - strandat 201.691 kb on + strandat 201.691 kb on + strandat 201.691 kb on + strandat 201.692 kb on - strandat 201.692 kb on - strandat 201.692 kb on - strandat 201.918 kb on + strandat 201.918 kb on + strandat 201.918 kb on + strandat 201.919 kb on - strandat 201.919 kb on - strandat 201.919 kb on - strandat 201.951 kb on + strandat 201.952 kb on - strandat 201.987 kb on - strandat 202.027 kb on - strand, within SMc02851at 202.086 kb on + strand, within SMc02851at 202.087 kb on - strand, within SMc02851at 202.087 kb on - strand, within SMc02851at 202.087 kb on - strand, within SMc02851at 202.159 kb on + strand, within SMc02851at 202.160 kb on - strand, within SMc02851at 202.160 kb on - strand, within SMc02851at 202.234 kb on - strand, within SMc02851at 202.234 kb on - strand, within SMc02851at 202.349 kb on + strand, within SMc02851at 202.349 kb on + strand, within SMc02851at 202.350 kb on - strand, within SMc02851at 202.350 kb on - strand, within SMc02851at 202.350 kb on - strand, within SMc02851at 202.350 kb on - strand, within SMc02851at 202.352 kb on - strand, within SMc02851at 202.352 kb on - strand, within SMc02851at 202.509 kb on + strandat 202.509 kb on + strandat 202.510 kb on - strandat 202.510 kb on - strandat 202.768 kb on + strand, within SMc02852at 202.925 kb on - strand, within SMc02852at 202.926 kb on + strand, within SMc02852at 202.926 kb on + strand, within SMc02852at 202.927 kb on - strand, within SMc02852at 203.047 kb on + strand, within SMc02852at 203.048 kb on - strand, within SMc02852at 203.304 kb on + strand, within SMc02852at 203.304 kb on + strand, within SMc02852at 203.304 kb on + strand, within SMc02852at 203.305 kb on - strand, within SMc02852at 203.305 kb on - strand, within SMc02852

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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201,542 + +0.3
201,543 - +0.7
201,545 + +0.5
201,546 - +0.6
201,546 - -0.2
201,691 + -0.7
201,691 + -2.4
201,691 + -0.5
201,692 - +0.3
201,692 - +0.4
201,692 - -0.7
201,918 + -1.5
201,918 + -1.1
201,918 + -0.4
201,919 - -0.1
201,919 - -0.1
201,919 - -0.3
201,951 + -0.2
201,952 - +0.0
201,987 - -0.3
202,027 - SMc02851 0.16 -1.3
202,086 + SMc02851 0.29 -0.8
202,087 - SMc02851 0.30 -0.2
202,087 - SMc02851 0.30 +1.0
202,087 - SMc02851 0.30 -1.3
202,159 + SMc02851 0.46 +2.1
202,160 - SMc02851 0.46 +0.1
202,160 - SMc02851 0.46 -1.3
202,234 - SMc02851 0.63 -1.1
202,234 - SMc02851 0.63 -0.8
202,349 + SMc02851 0.89 -0.3
202,349 + SMc02851 0.89 +0.3
202,350 - SMc02851 0.89 -0.7
202,350 - SMc02851 0.89 -1.8
202,350 - SMc02851 0.89 -0.1
202,350 - SMc02851 0.89 -0.1
202,352 - SMc02851 0.89 -1.1
202,352 - SMc02851 0.89 -1.2
202,509 + +0.5
202,509 + -0.8
202,510 - +0.1
202,510 - -1.3
202,768 + SMc02852 0.19 -0.6
202,925 - SMc02852 0.31 +0.0
202,926 + SMc02852 0.31 +0.8
202,926 + SMc02852 0.31 -0.5
202,927 - SMc02852 0.31 +0.7
203,047 + SMc02852 0.39 -2.2
203,048 - SMc02852 0.39 +0.4
203,304 + SMc02852 0.58 -0.0
203,304 + SMc02852 0.58 -1.1
203,304 + SMc02852 0.58 -1.5
203,305 - SMc02852 0.58 -0.4
203,305 - SMc02852 0.58 -0.4

Or see this region's nucleotide sequence