Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02780 and SMc02779 are separated by 195 nucleotides SMc02779 and SMc02778 are separated by 281 nucleotides
SMc02780: SMc02780 - succinate-semialdehyde dehydrogenase [NADP+] protein, at 11,996 to 13,450
SMc02780
SMc02779: SMc02779 - transposase, at 13,646 to 14,611
SMc02779
SMc02778: SMc02778 - hydroxyacid aldolase, at 14,893 to 15,693
SMc02778
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.682 kb on + strand, within SMc02780 at 12.881 kb on + strand, within SMc02780 at 12.881 kb on + strand, within SMc02780 at 12.882 kb on - strand, within SMc02780 at 12.882 kb on - strand, within SMc02780 at 12.882 kb on - strand, within SMc02780 at 12.900 kb on - strand, within SMc02780 at 13.250 kb on + strand, within SMc02780 at 13.395 kb on - strand at 13.424 kb on + strand at 13.424 kb on + strand at 13.424 kb on + strand at 13.424 kb on + strand at 13.425 kb on - strand at 13.425 kb on - strand at 13.425 kb on - strand at 13.425 kb on - strand at 13.604 kb on + strand at 13.643 kb on - strand at 13.643 kb on - strand at 13.643 kb on - strand at 13.648 kb on - strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.799 kb on + strand at 14.892 kb on + strand at 14.977 kb on + strand, within SMc02778 at 15.301 kb on + strand, within SMc02778
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 12,682 + SMc02780 0.47 +0.9 12,881 + SMc02780 0.61 -1.0 12,881 + SMc02780 0.61 +2.1 12,882 - SMc02780 0.61 +0.4 12,882 - SMc02780 0.61 +0.9 12,882 - SMc02780 0.61 -0.8 12,900 - SMc02780 0.62 -1.4 13,250 + SMc02780 0.86 -0.7 13,395 - +0.1 13,424 + -2.7 13,424 + -0.9 13,424 + -0.5 13,424 + +0.2 13,425 - +0.3 13,425 - -1.5 13,425 - -0.0 13,425 - +0.7 13,604 + +0.4 13,643 - -0.5 13,643 - -1.9 13,643 - -0.3 13,648 - -3.3 14,799 + -0.2 14,799 + +0.8 14,799 + -3.3 14,799 + +0.7 14,799 + +2.3 14,799 + -0.7 14,799 + -0.2 14,892 + -0.7 14,977 + SMc02778 0.10 -1.7 15,301 + SMc02778 0.51 -1.3
Or see this region's nucleotide sequence