Strain Fitness in Sinorhizobium meliloti 1021 around SMc02765

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02766 and SMc02765 are separated by 5 nucleotidesSMc02765 and SMc02764 are separated by 53 nucleotidesSMc02764 and SMc02763 are separated by 15 nucleotides SMc02766: SMc02766 - tryptophan synthase subunit beta, at 28,048 to 29,268 SMc02766 SMc02765: SMc02765 - tryptophan synthase subunit alpha, at 29,274 to 30,113 SMc02765 SMc02764: SMc02764 - acetyl-CoA carboxylase subunit beta, at 30,167 to 31,081 SMc02764 SMc02763: SMc02763 - bifunctional folylpolyglutamate synthase/dihydrofolate synthase, at 31,097 to 32,440 SMc02763 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 28.303 kb on + strand, within SMc02766at 28.304 kb on - strand, within SMc02766at 28.480 kb on + strand, within SMc02766at 28.481 kb on - strand, within SMc02766at 28.481 kb on - strand, within SMc02766at 28.481 kb on - strand, within SMc02766at 28.481 kb on - strand, within SMc02766at 28.481 kb on - strand, within SMc02766at 28.532 kb on - strand, within SMc02766at 28.636 kb on + strand, within SMc02766at 28.636 kb on + strand, within SMc02766at 28.636 kb on + strand, within SMc02766at 28.636 kb on + strand, within SMc02766at 28.637 kb on - strand, within SMc02766at 28.640 kb on - strand, within SMc02766at 28.646 kb on + strand, within SMc02766at 28.646 kb on + strand, within SMc02766at 28.647 kb on - strand, within SMc02766at 28.647 kb on - strand, within SMc02766at 28.936 kb on + strand, within SMc02766at 28.936 kb on + strand, within SMc02766at 28.937 kb on - strand, within SMc02766at 28.937 kb on - strand, within SMc02766at 28.937 kb on - strand, within SMc02766at 28.937 kb on - strand, within SMc02766at 28.937 kb on - strand, within SMc02766at 29.053 kb on + strand, within SMc02766at 29.053 kb on + strand, within SMc02766at 29.053 kb on + strand, within SMc02766at 29.053 kb on + strand, within SMc02766at 29.054 kb on - strand, within SMc02766at 29.266 kb on + strandat 29.267 kb on - strandat 29.341 kb on - strandat 29.580 kb on + strand, within SMc02765at 29.584 kb on - strand, within SMc02765at 29.584 kb on - strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.596 kb on - strand, within SMc02765at 29.596 kb on - strand, within SMc02765at 29.596 kb on - strand, within SMc02765at 29.596 kb on - strand, within SMc02765at 29.596 kb on - strand, within SMc02765at 29.597 kb on + strand, within SMc02765at 29.597 kb on + strand, within SMc02765at 29.597 kb on + strand, within SMc02765at 29.598 kb on - strand, within SMc02765at 29.598 kb on - strand, within SMc02765at 29.598 kb on - strand, within SMc02765at 29.601 kb on + strand, within SMc02765at 29.602 kb on - strand, within SMc02765at 29.602 kb on - strand, within SMc02765at 29.602 kb on - strand, within SMc02765at 29.602 kb on - strand, within SMc02765at 29.799 kb on + strand, within SMc02765at 29.802 kb on + strand, within SMc02765at 29.802 kb on + strand, within SMc02765at 29.803 kb on - strand, within SMc02765at 29.803 kb on - strand, within SMc02765at 29.885 kb on + strand, within SMc02765at 29.886 kb on - strand, within SMc02765at 29.886 kb on - strand, within SMc02765at 31.084 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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28,303 + SMc02766 0.21 +0.7
28,304 - SMc02766 0.21 +1.7
28,480 + SMc02766 0.35 +0.8
28,481 - SMc02766 0.35 +1.1
28,481 - SMc02766 0.35 +0.5
28,481 - SMc02766 0.35 +0.4
28,481 - SMc02766 0.35 +0.9
28,481 - SMc02766 0.35 +0.4
28,532 - SMc02766 0.40 +0.3
28,636 + SMc02766 0.48 +1.0
28,636 + SMc02766 0.48 +1.2
28,636 + SMc02766 0.48 -3.3
28,636 + SMc02766 0.48 +1.0
28,637 - SMc02766 0.48 +0.2
28,640 - SMc02766 0.48 +0.9
28,646 + SMc02766 0.49 -1.7
28,646 + SMc02766 0.49 +0.4
28,647 - SMc02766 0.49 +1.2
28,647 - SMc02766 0.49 -0.0
28,936 + SMc02766 0.73 +0.3
28,936 + SMc02766 0.73 -0.3
28,937 - SMc02766 0.73 +0.7
28,937 - SMc02766 0.73 +1.2
28,937 - SMc02766 0.73 +1.4
28,937 - SMc02766 0.73 +0.7
28,937 - SMc02766 0.73 +0.7
29,053 + SMc02766 0.82 +0.6
29,053 + SMc02766 0.82 +0.3
29,053 + SMc02766 0.82 +2.5
29,053 + SMc02766 0.82 +0.8
29,054 - SMc02766 0.82 +1.5
29,266 + +1.6
29,267 - +2.0
29,341 - -0.4
29,580 + SMc02765 0.36 +1.0
29,584 - SMc02765 0.37 +1.1
29,584 - SMc02765 0.37 +1.0
29,595 + SMc02765 0.38 +0.8
29,595 + SMc02765 0.38 +1.5
29,595 + SMc02765 0.38 +0.3
29,595 + SMc02765 0.38 +1.2
29,595 + SMc02765 0.38 +0.6
29,595 + SMc02765 0.38 +0.9
29,595 + SMc02765 0.38 +1.5
29,596 - SMc02765 0.38 +1.7
29,596 - SMc02765 0.38 +0.4
29,596 - SMc02765 0.38 +1.8
29,596 - SMc02765 0.38 +0.7
29,596 - SMc02765 0.38 +1.0
29,597 + SMc02765 0.38 +1.0
29,597 + SMc02765 0.38 +1.3
29,597 + SMc02765 0.38 +0.0
29,598 - SMc02765 0.39 +1.6
29,598 - SMc02765 0.39 +1.1
29,598 - SMc02765 0.39 +1.1
29,601 + SMc02765 0.39 +3.0
29,602 - SMc02765 0.39 +0.3
29,602 - SMc02765 0.39 +0.0
29,602 - SMc02765 0.39 +0.3
29,602 - SMc02765 0.39 +1.2
29,799 + SMc02765 0.62 -0.8
29,802 + SMc02765 0.63 +0.5
29,802 + SMc02765 0.63 +1.2
29,803 - SMc02765 0.63 +0.7
29,803 - SMc02765 0.63 +1.0
29,885 + SMc02765 0.73 +2.1
29,886 - SMc02765 0.73 +0.7
29,886 - SMc02765 0.73 +1.0
31,084 + -0.4

Or see this region's nucleotide sequence