Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02759 and SMc02758 are separated by 1 nucleotides SMc02758 and SMc02757 are separated by 6 nucleotides SMc02757 and SMc02756 are separated by 9 nucleotides
SMc02759: SMc02759 - hypothetical protein, at 38,055 to 41,234
SMc02759
SMc02758: SMc02758 - nucleotidyl transferase, at 41,236 to 41,967
SMc02758
SMc02757: SMc02757 - hypothetical protein, at 41,974 to 43,488
SMc02757
SMc02756: SMc02756 - sensor histidine kinase, at 43,498 to 45,978
SMc02756
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.282 kb on - strand at 41.367 kb on - strand, within SMc02758 at 41.852 kb on + strand, within SMc02758 at 41.853 kb on - strand, within SMc02758 at 41.853 kb on - strand, within SMc02758 at 41.876 kb on - strand, within SMc02758 at 42.012 kb on + strand at 42.236 kb on + strand, within SMc02757 at 42.237 kb on - strand, within SMc02757 at 42.311 kb on + strand, within SMc02757 at 42.312 kb on - strand, within SMc02757 at 42.477 kb on - strand, within SMc02757 at 42.527 kb on + strand, within SMc02757 at 42.671 kb on + strand, within SMc02757 at 42.860 kb on + strand, within SMc02757 at 42.861 kb on - strand, within SMc02757 at 42.861 kb on - strand, within SMc02757 at 42.861 kb on - strand, within SMc02757 at 42.879 kb on + strand, within SMc02757 at 42.879 kb on + strand, within SMc02757 at 42.880 kb on - strand, within SMc02757 at 42.880 kb on - strand, within SMc02757 at 42.880 kb on - strand, within SMc02757 at 42.999 kb on - strand, within SMc02757 at 43.491 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 41,282 - -0.8 41,367 - SMc02758 0.18 -1.3 41,852 + SMc02758 0.84 -2.7 41,853 - SMc02758 0.84 -0.2 41,853 - SMc02758 0.84 +0.6 41,876 - SMc02758 0.87 -0.8 42,012 + -1.9 42,236 + SMc02757 0.17 +2.5 42,237 - SMc02757 0.17 +3.5 42,311 + SMc02757 0.22 +2.4 42,312 - SMc02757 0.22 +1.8 42,477 - SMc02757 0.33 -1.1 42,527 + SMc02757 0.37 -1.3 42,671 + SMc02757 0.46 -0.1 42,860 + SMc02757 0.58 -0.2 42,861 - SMc02757 0.59 +0.2 42,861 - SMc02757 0.59 -0.3 42,861 - SMc02757 0.59 +1.3 42,879 + SMc02757 0.60 +0.4 42,879 + SMc02757 0.60 +0.7 42,880 - SMc02757 0.60 -3.0 42,880 - SMc02757 0.60 +0.4 42,880 - SMc02757 0.60 -1.1 42,999 - SMc02757 0.68 -0.2 43,491 - -0.7
Or see this region's nucleotide sequence