Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02755 and SMc02754 are separated by 156 nucleotides SMc02754 and SMc02753 overlap by 1 nucleotides SMc02753 and SMc02752 are separated by 280 nucleotides SMc02752 and SMc04446 overlap by 4 nucleotides
SMc02755: SMc02755 - S-adenosyl-L-homocysteine hydrolase, at 46,280 to 47,680
SMc02755
SMc02754: SMc02754 - phosphocarrier HPr, at 47,837 to 48,127
SMc02754
SMc02753: SMc02753 - PTS system transporter subunit IIA, at 48,127 to 48,528
SMc02753
SMc02752: SMc02752 - hypothetical protein, at 48,809 to 49,255
SMc02752
SMc04446: SMc04446 - histidine kinase sensory transmembrane protein, at 49,252 to 51,039
SMc04446
Position (kb)
48
49 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 47.265 kb on + strand, within SMc02755 at 47.265 kb on + strand, within SMc02755 at 47.265 kb on + strand, within SMc02755 at 47.266 kb on - strand, within SMc02755 at 47.343 kb on + strand, within SMc02755 at 47.344 kb on - strand, within SMc02755 at 47.352 kb on + strand, within SMc02755 at 47.661 kb on + strand at 47.662 kb on - strand at 47.662 kb on - strand at 47.662 kb on - strand at 47.701 kb on + strand at 47.807 kb on + strand at 47.808 kb on - strand at 47.809 kb on + strand at 47.810 kb on - strand at 47.810 kb on - strand at 47.810 kb on - strand at 47.823 kb on + strand at 47.831 kb on + strand at 48.424 kb on + strand, within SMc02753 at 48.533 kb on - strand at 48.551 kb on + strand at 48.686 kb on + strand at 48.686 kb on + strand at 48.687 kb on - strand at 48.745 kb on + strand at 48.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 47,265 + SMc02755 0.70 -2.9 47,265 + SMc02755 0.70 -1.3 47,265 + SMc02755 0.70 +0.1 47,266 - SMc02755 0.70 -1.3 47,343 + SMc02755 0.76 -0.3 47,344 - SMc02755 0.76 +2.3 47,352 + SMc02755 0.77 -0.0 47,661 + +2.8 47,662 - -2.4 47,662 - +1.3 47,662 - +0.4 47,701 + +0.3 47,807 + +1.2 47,808 - -2.1 47,809 + +0.7 47,810 - -0.7 47,810 - +0.2 47,810 - -1.1 47,823 + -2.8 47,831 + -0.5 48,424 + SMc02753 0.74 -3.4 48,533 - -0.8 48,551 + -0.1 48,686 + -0.7 48,686 + +0.1 48,687 - -1.6 48,745 + -0.6 48,751 + +0.1
Or see this region's nucleotide sequence