Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02737 and SMc02738 are separated by 156 nucleotides SMc02738 and SMc02739 overlap by 4 nucleotides
SMc02737: SMc02737 - glycine betaine-binding ABC transporter protein, at 2,591,143 to 2,592,099
SMc02737
SMc02738: SMc02738 - glycine betaine transport system permease ABC transporter protein, at 2,592,256 to 2,593,101
SMc02738
SMc02739: SMc02739 - glycine betaine transport ATP-binding ABC transporter protein, at 2,593,098 to 2,594,147
SMc02739
Position (kb)
2592
2593
2594 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2591.366 kb on - strand, within SMc02737 at 2591.455 kb on - strand, within SMc02737 at 2591.497 kb on + strand, within SMc02737 at 2591.590 kb on + strand, within SMc02737 at 2591.817 kb on - strand, within SMc02737 at 2591.817 kb on - strand, within SMc02737 at 2591.831 kb on - strand, within SMc02737 at 2592.119 kb on - strand at 2592.391 kb on + strand, within SMc02738 at 2592.392 kb on - strand, within SMc02738 at 2592.417 kb on + strand, within SMc02738 at 2592.520 kb on + strand, within SMc02738 at 2592.521 kb on - strand at 2592.534 kb on + strand, within SMc02738 at 2592.602 kb on + strand, within SMc02738 at 2592.603 kb on - strand, within SMc02738 at 2592.603 kb on - strand, within SMc02738 at 2592.629 kb on - strand, within SMc02738 at 2592.629 kb on - strand, within SMc02738 at 2592.683 kb on - strand, within SMc02738 at 2592.722 kb on + strand, within SMc02738 at 2593.001 kb on + strand, within SMc02738 at 2593.002 kb on - strand, within SMc02738 at 2593.035 kb on + strand at 2593.427 kb on + strand, within SMc02739 at 2593.427 kb on + strand, within SMc02739 at 2593.428 kb on - strand, within SMc02739 at 2593.428 kb on - strand, within SMc02739 at 2593.888 kb on - strand, within SMc02739 at 2594.059 kb on + strand at 2594.059 kb on + strand at 2594.059 kb on + strand at 2594.060 kb on - strand at 2594.060 kb on - strand at 2594.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 2,591,366 - SMc02737 0.23 -3.3 2,591,455 - SMc02737 0.33 -1.4 2,591,497 + SMc02737 0.37 -0.2 2,591,590 + SMc02737 0.47 +1.1 2,591,817 - SMc02737 0.70 -0.3 2,591,817 - SMc02737 0.70 +0.1 2,591,831 - SMc02737 0.72 +1.1 2,592,119 - -1.9 2,592,391 + SMc02738 0.16 -0.2 2,592,392 - SMc02738 0.16 -1.3 2,592,417 + SMc02738 0.19 +0.4 2,592,520 + SMc02738 0.31 -1.2 2,592,521 - +2.8 2,592,534 + SMc02738 0.33 +0.5 2,592,602 + SMc02738 0.41 -2.3 2,592,603 - SMc02738 0.41 -0.6 2,592,603 - SMc02738 0.41 -1.0 2,592,629 - SMc02738 0.44 +0.3 2,592,629 - SMc02738 0.44 -2.4 2,592,683 - SMc02738 0.50 -0.8 2,592,722 + SMc02738 0.55 -4.2 2,593,001 + SMc02738 0.88 -0.8 2,593,002 - SMc02738 0.88 +0.4 2,593,035 + -0.5 2,593,427 + SMc02739 0.31 -1.4 2,593,427 + SMc02739 0.31 -1.7 2,593,428 - SMc02739 0.31 -0.5 2,593,428 - SMc02739 0.31 -2.7 2,593,888 - SMc02739 0.75 +0.8 2,594,059 + +0.2 2,594,059 + -0.5 2,594,059 + -1.0 2,594,060 - -2.1 2,594,060 - -1.3 2,594,060 - -0.7
Or see this region's nucleotide sequence