Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02722 and SMc02723 are separated by 31 nucleotides SMc02723 and SMc02724 overlap by 4 nucleotides SMc02724 and SMc02725 are separated by 168 nucleotides
SMc02721: SMc02721 - outer membrane receptor protein, at 2,569,478 to 2,572,276
SMc02721
SMc02722: SMc02722 - aminoglycoside 3'-phosphotransferase, at 2,571,104 to 2,572,015
SMc02722
SMc02723: SMc02723 - 7-cyano-7-deazaguanine reductase, at 2,572,047 to 2,572,511
SMc02723
SMc02724: SMc02724 - hypothetical protein, at 2,572,508 to 2,573,428
SMc02724
SMc02725: SMc02725 - anthranilate synthase, at 2,573,597 to 2,575,786
SMc02725
Position (kb)
2572
2573
2574 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2572.153 kb on + strand at 2572.160 kb on - strand at 2572.312 kb on + strand, within SMc02723 at 2572.312 kb on + strand, within SMc02723 at 2572.313 kb on - strand at 2572.313 kb on - strand, within SMc02723 at 2572.323 kb on + strand, within SMc02723 at 2572.323 kb on + strand, within SMc02723 at 2572.323 kb on + strand, within SMc02723 at 2572.324 kb on - strand, within SMc02723 at 2572.324 kb on - strand, within SMc02723 at 2572.325 kb on + strand, within SMc02723 at 2572.325 kb on + strand, within SMc02723 at 2572.325 kb on + strand, within SMc02723 at 2572.326 kb on - strand, within SMc02723 at 2572.326 kb on - strand, within SMc02723 at 2572.326 kb on - strand, within SMc02723 at 2572.383 kb on - strand, within SMc02723 at 2573.031 kb on + strand, within SMc02724 at 2573.032 kb on - strand, within SMc02724 at 2573.102 kb on + strand, within SMc02724 at 2573.102 kb on + strand, within SMc02724 at 2573.191 kb on - strand, within SMc02724 at 2573.245 kb on - strand, within SMc02724 at 2573.350 kb on + strand at 2573.351 kb on - strand at 2573.351 kb on - strand at 2573.410 kb on + strand at 2573.411 kb on - strand at 2573.411 kb on - strand at 2573.411 kb on - strand at 2573.411 kb on - strand at 2573.431 kb on - strand at 2573.529 kb on - strand at 2573.820 kb on + strand, within SMc02725 at 2573.820 kb on + strand, within SMc02725 at 2573.821 kb on - strand, within SMc02725 at 2573.937 kb on + strand, within SMc02725 at 2574.147 kb on + strand, within SMc02725 at 2574.388 kb on + strand, within SMc02725 at 2574.389 kb on - strand, within SMc02725 at 2574.389 kb on - strand, within SMc02725 at 2574.406 kb on + strand, within SMc02725
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 2,572,153 + -0.1 2,572,160 - +0.5 2,572,312 + SMc02723 0.57 -0.1 2,572,312 + SMc02723 0.57 +0.4 2,572,313 - +4.0 2,572,313 - SMc02723 0.57 +0.3 2,572,323 + SMc02723 0.59 -0.2 2,572,323 + SMc02723 0.59 -0.3 2,572,323 + SMc02723 0.59 -2.6 2,572,324 - SMc02723 0.60 -0.7 2,572,324 - SMc02723 0.60 -0.3 2,572,325 + SMc02723 0.60 +2.3 2,572,325 + SMc02723 0.60 +0.8 2,572,325 + SMc02723 0.60 -0.5 2,572,326 - SMc02723 0.60 +0.7 2,572,326 - SMc02723 0.60 -0.5 2,572,326 - SMc02723 0.60 -0.3 2,572,383 - SMc02723 0.72 +1.6 2,573,031 + SMc02724 0.57 -0.0 2,573,032 - SMc02724 0.57 -1.8 2,573,102 + SMc02724 0.64 -2.2 2,573,102 + SMc02724 0.64 +0.1 2,573,191 - SMc02724 0.74 -1.8 2,573,245 - SMc02724 0.80 -1.4 2,573,350 + -0.4 2,573,351 - -2.2 2,573,351 - -0.8 2,573,410 + -0.3 2,573,411 - -1.9 2,573,411 - -1.5 2,573,411 - -1.1 2,573,411 - -0.2 2,573,431 - +0.5 2,573,529 - -1.0 2,573,820 + SMc02725 0.10 +0.0 2,573,820 + SMc02725 0.10 +1.2 2,573,821 - SMc02725 0.10 -0.1 2,573,937 + SMc02725 0.16 +0.0 2,574,147 + SMc02725 0.25 -1.3 2,574,388 + SMc02725 0.36 +0.1 2,574,389 - SMc02725 0.36 -0.1 2,574,389 - SMc02725 0.36 +0.5 2,574,406 + SMc02725 0.37 -0.9
Or see this region's nucleotide sequence