Strain Fitness in Sinorhizobium meliloti 1021 around SMc02583

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02582 and SMc02583 are separated by 63 nucleotidesSMc02583 and SMc02584 are separated by 14 nucleotidesSMc02584 and SMc02585 are separated by 186 nucleotides SMc02582: SMc02582 - hypothetical protein, at 71,294 to 72,130 SMc02582 SMc02583: SMc02583 - hypothetical protein, at 72,194 to 72,718 SMc02583 SMc02584: SMc02584 - transcriptional regulator, at 72,733 to 73,317 SMc02584 SMc02585: SMc02585 - sensor histidine kinase transmembrane protein, at 73,504 to 74,805 SMc02585 Position (kb) 72 73Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 71.201 kb on - strandat 71.343 kb on + strandat 71.343 kb on + strandat 71.343 kb on + strandat 71.469 kb on + strand, within SMc02582at 71.526 kb on + strand, within SMc02582at 71.605 kb on - strand, within SMc02582at 71.658 kb on - strand, within SMc02582at 71.682 kb on + strand, within SMc02582at 71.843 kb on + strand, within SMc02582at 71.843 kb on + strand, within SMc02582at 71.843 kb on + strand, within SMc02582at 72.034 kb on + strand, within SMc02582at 72.204 kb on + strandat 72.204 kb on + strandat 72.204 kb on + strandat 72.204 kb on + strandat 72.204 kb on + strandat 72.204 kb on + strandat 72.205 kb on - strandat 72.205 kb on - strandat 72.205 kb on - strandat 72.205 kb on - strandat 72.205 kb on - strandat 72.205 kb on - strandat 72.265 kb on - strand, within SMc02583at 72.537 kb on - strand, within SMc02583at 72.547 kb on + strand, within SMc02583at 72.547 kb on + strand, within SMc02583at 72.547 kb on + strand, within SMc02583at 72.547 kb on + strand, within SMc02583at 72.547 kb on + strand, within SMc02583at 72.548 kb on - strand, within SMc02583at 72.548 kb on - strand, within SMc02583at 72.548 kb on - strand, within SMc02583at 72.717 kb on - strandat 73.331 kb on - strandat 73.371 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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71,201 - +0.1
71,343 + -0.6
71,343 + -0.6
71,343 + -1.5
71,469 + SMc02582 0.21 -0.7
71,526 + SMc02582 0.28 -1.2
71,605 - SMc02582 0.37 -0.7
71,658 - SMc02582 0.43 -1.2
71,682 + SMc02582 0.46 -1.7
71,843 + SMc02582 0.66 -2.4
71,843 + SMc02582 0.66 -0.6
71,843 + SMc02582 0.66 +2.5
72,034 + SMc02582 0.88 +1.8
72,204 + -0.4
72,204 + -0.4
72,204 + -0.1
72,204 + +0.1
72,204 + -1.8
72,204 + +1.1
72,205 - +0.4
72,205 - -0.1
72,205 - -0.5
72,205 - -2.1
72,205 - +0.8
72,205 - +0.2
72,265 - SMc02583 0.14 +0.2
72,537 - SMc02583 0.65 -1.5
72,547 + SMc02583 0.67 -1.1
72,547 + SMc02583 0.67 -0.5
72,547 + SMc02583 0.67 +0.5
72,547 + SMc02583 0.67 +0.6
72,547 + SMc02583 0.67 -0.7
72,548 - SMc02583 0.67 -2.9
72,548 - SMc02583 0.67 -0.9
72,548 - SMc02583 0.67 -0.2
72,717 - -0.1
73,331 - +1.3
73,371 - +0.5

Or see this region's nucleotide sequence