Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02555 and SMc02554 overlap by 4 nucleotides SMc02554 and SMc02553 overlap by 2 nucleotides SMc02553 and SMc02552 are separated by 186 nucleotides SMc02552 and SMc02551 are separated by 414 nucleotides
SMc02555: SMc02555 - signal peptide protein, at 1,206,725 to 1,207,168
SMc02555
SMc02554: SMc02554 - hypothetical protein, at 1,207,165 to 1,207,629
SMc02554
SMc02553: SMc02553 - hypothetical protein, at 1,207,628 to 1,208,458
SMc02553
SMc02552: SMc02552 - hypothetical protein, at 1,208,645 to 1,208,794
SMc02552
SMc02551: SMc02551 - cysteinyl-tRNA synthetase, at 1,209,209 to 1,210,609
SMc02551
Position (kb)
1207
1208
1209 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1206.651 kb on - strand at 1206.651 kb on - strand at 1206.671 kb on - strand at 1206.718 kb on + strand at 1206.719 kb on - strand at 1206.719 kb on - strand at 1206.727 kb on - strand at 1207.400 kb on - strand, within SMc02554 at 1207.416 kb on - strand, within SMc02554 at 1207.416 kb on - strand, within SMc02554 at 1207.530 kb on - strand, within SMc02554 at 1207.530 kb on - strand, within SMc02554 at 1207.530 kb on - strand, within SMc02554 at 1207.530 kb on - strand, within SMc02554 at 1207.662 kb on - strand at 1207.662 kb on - strand at 1207.665 kb on - strand at 1207.665 kb on - strand at 1207.665 kb on - strand at 1207.665 kb on - strand at 1207.665 kb on - strand at 1207.992 kb on + strand, within SMc02553 at 1207.993 kb on - strand, within SMc02553 at 1207.993 kb on - strand, within SMc02553 at 1208.164 kb on + strand, within SMc02553 at 1208.309 kb on + strand, within SMc02553 at 1208.391 kb on + strand at 1208.391 kb on + strand at 1208.646 kb on + strand at 1208.646 kb on + strand at 1208.647 kb on - strand at 1208.832 kb on + strand at 1208.833 kb on - strand at 1208.900 kb on - strand at 1209.067 kb on + strand at 1209.076 kb on + strand at 1209.132 kb on + strand at 1209.132 kb on + strand at 1209.132 kb on + strand at 1209.171 kb on + strand at 1209.171 kb on + strand at 1209.171 kb on + strand at 1209.171 kb on + strand at 1209.173 kb on + strand at 1209.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,206,651 - -0.2 1,206,651 - -0.8 1,206,671 - +0.7 1,206,718 + -0.1 1,206,719 - +1.8 1,206,719 - +0.1 1,206,727 - +0.2 1,207,400 - SMc02554 0.51 -0.3 1,207,416 - SMc02554 0.54 -2.9 1,207,416 - SMc02554 0.54 -0.5 1,207,530 - SMc02554 0.78 +0.5 1,207,530 - SMc02554 0.78 -0.5 1,207,530 - SMc02554 0.78 +0.4 1,207,530 - SMc02554 0.78 +0.2 1,207,662 - +2.4 1,207,662 - +0.3 1,207,665 - +0.8 1,207,665 - +0.3 1,207,665 - +0.2 1,207,665 - +0.1 1,207,665 - +1.0 1,207,992 + SMc02553 0.44 -0.0 1,207,993 - SMc02553 0.44 -0.0 1,207,993 - SMc02553 0.44 +0.6 1,208,164 + SMc02553 0.65 +0.7 1,208,309 + SMc02553 0.82 -0.4 1,208,391 + -0.1 1,208,391 + -0.1 1,208,646 + +0.3 1,208,646 + +0.6 1,208,647 - +1.4 1,208,832 + +0.1 1,208,833 - -1.3 1,208,900 - +0.5 1,209,067 + -0.3 1,209,076 + -0.4 1,209,132 + +0.2 1,209,132 + -0.3 1,209,132 + +0.5 1,209,171 + -1.3 1,209,171 + -0.8 1,209,171 + +1.1 1,209,171 + -3.0 1,209,173 + -1.4 1,209,173 + -0.4
Or see this region's nucleotide sequence