Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02494 and SMc02493 are separated by 554 nucleotides SMc02493 and SMc02492 overlap by 4 nucleotides
SMc02494: SMc02494 - hypothetical protein, at 3,299,550 to 3,301,079
SMc02494
SMc02493: SMc02493 - hypothetical protein, at 3,301,634 to 3,302,230
SMc02493
SMc02492: SMc02492 - hypothetical protein, at 3,302,227 to 3,303,396
SMc02492
Position (kb)
3301
3302
3303 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3300.691 kb on + strand, within SMc02494 at 3300.691 kb on + strand, within SMc02494 at 3300.691 kb on + strand, within SMc02494 at 3300.692 kb on - strand, within SMc02494 at 3300.711 kb on - strand, within SMc02494 at 3301.025 kb on + strand at 3301.026 kb on - strand at 3301.186 kb on - strand at 3301.510 kb on - strand at 3301.631 kb on - strand at 3301.778 kb on + strand, within SMc02493 at 3301.787 kb on + strand, within SMc02493 at 3301.788 kb on - strand, within SMc02493 at 3301.788 kb on - strand, within SMc02493 at 3301.910 kb on + strand, within SMc02493 at 3301.910 kb on + strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.979 kb on - strand, within SMc02493 at 3302.092 kb on + strand, within SMc02493 at 3302.121 kb on + strand, within SMc02493 at 3302.274 kb on + strand at 3302.275 kb on - strand at 3302.275 kb on - strand at 3302.388 kb on - strand, within SMc02492 at 3302.388 kb on - strand, within SMc02492 at 3302.485 kb on + strand, within SMc02492 at 3302.486 kb on - strand, within SMc02492 at 3302.572 kb on + strand, within SMc02492 at 3302.632 kb on + strand, within SMc02492 at 3302.632 kb on + strand, within SMc02492 at 3302.633 kb on - strand, within SMc02492 at 3302.887 kb on + strand, within SMc02492 at 3302.887 kb on + strand, within SMc02492 at 3302.887 kb on + strand, within SMc02492 at 3302.888 kb on - strand, within SMc02492 at 3302.888 kb on - strand, within SMc02492 at 3302.888 kb on - strand, within SMc02492 at 3302.888 kb on - strand, within SMc02492 at 3302.968 kb on + strand, within SMc02492 at 3302.968 kb on + strand, within SMc02492 at 3302.969 kb on - strand, within SMc02492 at 3303.016 kb on + strand, within SMc02492 at 3303.016 kb on + strand, within SMc02492 at 3303.017 kb on - strand, within SMc02492 at 3303.017 kb on - strand, within SMc02492 at 3303.100 kb on + strand, within SMc02492 at 3303.101 kb on - strand, within SMc02492 at 3303.103 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.158 kb on + strand, within SMc02492 at 3303.205 kb on + strand, within SMc02492 at 3303.206 kb on - strand, within SMc02492
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 3,300,691 + SMc02494 0.75 -0.5 3,300,691 + SMc02494 0.75 -1.5 3,300,691 + SMc02494 0.75 +1.4 3,300,692 - SMc02494 0.75 +0.6 3,300,711 - SMc02494 0.76 -0.2 3,301,025 + -0.4 3,301,026 - +2.5 3,301,186 - +0.0 3,301,510 - +1.4 3,301,631 - +4.9 3,301,778 + SMc02493 0.24 +0.2 3,301,787 + SMc02493 0.26 +0.2 3,301,788 - SMc02493 0.26 +0.8 3,301,788 - SMc02493 0.26 +0.5 3,301,910 + SMc02493 0.46 -1.2 3,301,910 + SMc02493 0.46 -0.2 3,301,911 - SMc02493 0.46 -0.8 3,301,911 - SMc02493 0.46 +0.6 3,301,911 - SMc02493 0.46 -2.1 3,301,911 - SMc02493 0.46 +0.3 3,301,979 - SMc02493 0.58 +0.4 3,302,092 + SMc02493 0.77 -2.6 3,302,121 + SMc02493 0.82 -0.3 3,302,274 + +0.5 3,302,275 - -0.3 3,302,275 - +0.5 3,302,388 - SMc02492 0.14 +0.7 3,302,388 - SMc02492 0.14 -0.1 3,302,485 + SMc02492 0.22 -0.3 3,302,486 - SMc02492 0.22 -0.4 3,302,572 + SMc02492 0.29 +0.3 3,302,632 + SMc02492 0.35 -0.0 3,302,632 + SMc02492 0.35 -1.0 3,302,633 - SMc02492 0.35 +0.2 3,302,887 + SMc02492 0.56 +0.2 3,302,887 + SMc02492 0.56 +0.1 3,302,887 + SMc02492 0.56 -1.1 3,302,888 - SMc02492 0.56 -0.2 3,302,888 - SMc02492 0.56 +3.4 3,302,888 - SMc02492 0.56 -0.4 3,302,888 - SMc02492 0.56 -0.5 3,302,968 + SMc02492 0.63 -0.4 3,302,968 + SMc02492 0.63 -1.0 3,302,969 - SMc02492 0.63 -0.1 3,303,016 + SMc02492 0.67 +0.6 3,303,016 + SMc02492 0.67 -0.6 3,303,017 - SMc02492 0.68 +0.6 3,303,017 - SMc02492 0.68 -0.7 3,303,100 + SMc02492 0.75 +0.1 3,303,101 - SMc02492 0.75 -0.0 3,303,103 + SMc02492 0.75 +0.4 3,303,109 + SMc02492 0.75 +0.4 3,303,109 + SMc02492 0.75 +0.1 3,303,109 + SMc02492 0.75 +1.2 3,303,109 + SMc02492 0.75 -0.9 3,303,109 + SMc02492 0.75 +0.9 3,303,109 + SMc02492 0.75 +0.1 3,303,109 + SMc02492 0.75 +0.7 3,303,110 - SMc02492 0.75 +0.7 3,303,110 - SMc02492 0.75 -0.2 3,303,110 - SMc02492 0.75 +0.2 3,303,110 - SMc02492 0.75 +4.9 3,303,110 - SMc02492 0.75 -0.3 3,303,110 - SMc02492 0.75 +1.2 3,303,110 - SMc02492 0.75 +1.4 3,303,110 - SMc02492 0.75 -0.7 3,303,158 + SMc02492 0.80 -0.1 3,303,205 + SMc02492 0.84 +0.7 3,303,206 - SMc02492 0.84 -0.3
Or see this region's nucleotide sequence