Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02476 and SMc02475 are separated by 217 nucleotides SMc02475 and SMc02474 are separated by 195 nucleotides SMc02474 and SMc02473 are separated by 36 nucleotides SMc02473 and SMc02472 overlap by 8 nucleotides
SMc02476: SMc02476 - hypothetical protein, at 3,321,113 to 3,321,391
SMc02476
SMc02475: SMc02475 - outer membrane lipoprotein, at 3,321,609 to 3,322,148
SMc02475
SMc02474: SMc02474 - ABC transporter ATP-binding protein, at 3,322,344 to 3,323,414
SMc02474
SMc02473: SMc02473 - ABC transporter permease, at 3,323,451 to 3,324,299
SMc02473
SMc02472: SMc02472 - ABC transporter permease, at 3,324,292 to 3,325,230
SMc02472
Position (kb)
3322
3323
3324 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3321.502 kb on + strand at 3321.518 kb on - strand at 3322.378 kb on + strand at 3322.379 kb on - strand at 3322.455 kb on + strand, within SMc02474 at 3322.455 kb on + strand, within SMc02474 at 3322.850 kb on - strand, within SMc02474 at 3323.377 kb on + strand at 3323.377 kb on + strand at 3323.414 kb on + strand at 3323.415 kb on - strand at 3323.415 kb on - strand at 3323.415 kb on - strand at 3323.588 kb on - strand, within SMc02473 at 3323.614 kb on + strand, within SMc02473 at 3323.614 kb on - strand, within SMc02473 at 3323.653 kb on + strand, within SMc02473 at 3323.653 kb on + strand, within SMc02473 at 3323.653 kb on + strand, within SMc02473 at 3323.653 kb on + strand, within SMc02473 at 3323.653 kb on + strand, within SMc02473 at 3323.654 kb on - strand, within SMc02473 at 3323.654 kb on - strand, within SMc02473 at 3323.666 kb on + strand, within SMc02473 at 3323.666 kb on + strand, within SMc02473 at 3323.667 kb on - strand, within SMc02473 at 3323.746 kb on + strand, within SMc02473 at 3323.869 kb on + strand, within SMc02473 at 3323.870 kb on - strand, within SMc02473 at 3323.956 kb on + strand, within SMc02473 at 3323.957 kb on - strand, within SMc02473 at 3324.112 kb on + strand, within SMc02473 at 3324.244 kb on + strand at 3324.244 kb on + strand at 3324.244 kb on + strand at 3324.244 kb on + strand at 3324.244 kb on + strand at 3324.244 kb on + strand at 3324.245 kb on - strand at 3324.250 kb on + strand at 3324.251 kb on - strand at 3324.251 kb on - strand at 3324.311 kb on - strand at 3324.321 kb on - strand at 3324.405 kb on - strand, within SMc02472 at 3324.405 kb on - strand, within SMc02472 at 3324.410 kb on + strand, within SMc02472 at 3324.411 kb on - strand, within SMc02472 at 3324.411 kb on - strand, within SMc02472
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 3,321,502 + -0.2 3,321,518 - -1.6 3,322,378 + +1.0 3,322,379 - +2.4 3,322,455 + SMc02474 0.10 -1.9 3,322,455 + SMc02474 0.10 -1.3 3,322,850 - SMc02474 0.47 -0.5 3,323,377 + -0.6 3,323,377 + -0.5 3,323,414 + +0.9 3,323,415 - -0.8 3,323,415 - -0.2 3,323,415 - -0.2 3,323,588 - SMc02473 0.16 -0.4 3,323,614 + SMc02473 0.19 +0.8 3,323,614 - SMc02473 0.19 -1.5 3,323,653 + SMc02473 0.24 +0.1 3,323,653 + SMc02473 0.24 -0.9 3,323,653 + SMc02473 0.24 -1.2 3,323,653 + SMc02473 0.24 +0.2 3,323,653 + SMc02473 0.24 -0.6 3,323,654 - SMc02473 0.24 -1.6 3,323,654 - SMc02473 0.24 -1.4 3,323,666 + SMc02473 0.25 +0.1 3,323,666 + SMc02473 0.25 +2.1 3,323,667 - SMc02473 0.25 -4.1 3,323,746 + SMc02473 0.35 +0.2 3,323,869 + SMc02473 0.49 -2.2 3,323,870 - SMc02473 0.49 -0.2 3,323,956 + SMc02473 0.59 -0.0 3,323,957 - SMc02473 0.60 -2.1 3,324,112 + SMc02473 0.78 +0.1 3,324,244 + -3.9 3,324,244 + -0.3 3,324,244 + -0.6 3,324,244 + +0.7 3,324,244 + +2.3 3,324,244 + +0.0 3,324,245 - +1.1 3,324,250 + +2.2 3,324,251 - -1.3 3,324,251 - +0.4 3,324,311 - +0.1 3,324,321 - +0.4 3,324,405 - SMc02472 0.12 +0.7 3,324,405 - SMc02472 0.12 -0.4 3,324,410 + SMc02472 0.13 -0.1 3,324,411 - SMc02472 0.13 -0.3 3,324,411 - SMc02472 0.13 +0.3
Or see this region's nucleotide sequence