Strain Fitness in Sinorhizobium meliloti 1021 around SMc02449

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02447 and SMc02448 are separated by 280 nucleotidesSMc02448 and SMc02449 are separated by 5 nucleotidesSMc02449 and SMc02450 overlap by 32 nucleotides SMc02447: SMc02447 - hypothetical protein, at 2,829,473 to 2,829,793 SMc02447 SMc02448: SMc02448 - mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase, at 2,830,074 to 2,830,481 SMc02448 SMc02449: SMc02449 - acetyltransferase, at 2,830,487 to 2,831,413 SMc02449 SMc02450: SMc02450 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 2,831,382 to 2,832,623 SMc02450 Position (kb) 2830 2831 2832Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2830.050 kb on + strandat 2830.052 kb on + strandat 2830.052 kb on + strandat 2830.052 kb on + strandat 2830.053 kb on - strandat 2830.076 kb on - strandat 2830.129 kb on + strand, within SMc02448at 2830.214 kb on - strand, within SMc02448at 2830.214 kb on - strand, within SMc02448at 2830.472 kb on + strandat 2831.306 kb on - strand, within SMc02449at 2831.306 kb on - strand, within SMc02449at 2831.381 kb on - strandat 2831.393 kb on - strandat 2831.414 kb on - strandat 2831.706 kb on - strand, within SMc02450at 2831.706 kb on - strand, within SMc02450at 2832.144 kb on - strand, within SMc02450

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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2,830,050 + +0.1
2,830,052 + -1.4
2,830,052 + +2.1
2,830,052 + +0.5
2,830,053 - +0.8
2,830,076 - +0.0
2,830,129 + SMc02448 0.13 -1.1
2,830,214 - SMc02448 0.34 +0.8
2,830,214 - SMc02448 0.34 -0.1
2,830,472 + -2.9
2,831,306 - SMc02449 0.88 +0.2
2,831,306 - SMc02449 0.88 +1.4
2,831,381 - +0.6
2,831,393 - +1.4
2,831,414 - -3.3
2,831,706 - SMc02450 0.26 +0.8
2,831,706 - SMc02450 0.26 +0.3
2,832,144 - SMc02450 0.61 +0.1

Or see this region's nucleotide sequence