Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02361 and SMc02362 overlap by 4 nucleotides SMc02362 and SMc02363 overlap by 4 nucleotides SMc02363 and SMc02364 are separated by 60 nucleotides SMc02364 and SMc02365 are separated by 299 nucleotides
SMc02361: SMc02361 - cytochrome C-type biogenesis transmembrane protein, at 1,107,820 to 1,108,965
SMc02361
SMc02362: SMc02362 - cytochrome c-type biogenesis protein CcmE, at 1,108,962 to 1,109,414
SMc02362
SMc02363: SMc02363 - cytochrome C-type biogenesis transmembrane protein, at 1,109,411 to 1,111,441
SMc02363
SMc02364: SMc02364 - cytochrome C-type biogenesis transmembrane protein, at 1,111,502 to 1,111,957
SMc02364
SMc02365: SMc02365 - protease precursor protein, at 1,112,257 to 1,113,771
SMc02365
Position (kb)
1109
1110
1111
1112 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1108.438 kb on - strand, within SMc02361 at 1108.438 kb on - strand, within SMc02361 at 1108.692 kb on + strand, within SMc02361 at 1108.693 kb on - strand, within SMc02361 at 1108.822 kb on + strand, within SMc02361 at 1108.822 kb on + strand, within SMc02361 at 1108.822 kb on + strand, within SMc02361 at 1109.070 kb on + strand, within SMc02362 at 1109.220 kb on + strand, within SMc02362 at 1109.340 kb on + strand, within SMc02362 at 1109.340 kb on + strand, within SMc02362 at 1111.058 kb on + strand, within SMc02363 at 1111.199 kb on + strand, within SMc02363 at 1111.199 kb on + strand, within SMc02363 at 1111.200 kb on - strand, within SMc02363 at 1111.433 kb on - strand at 1111.440 kb on - strand at 1112.026 kb on - strand at 1112.057 kb on + strand at 1112.058 kb on - strand at 1112.058 kb on - strand at 1112.072 kb on + strand at 1112.073 kb on - strand at 1112.223 kb on + strand at 1112.223 kb on + strand at 1112.223 kb on + strand at 1112.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,108,438 - SMc02361 0.54 +0.2 1,108,438 - SMc02361 0.54 -1.8 1,108,692 + SMc02361 0.76 +1.8 1,108,693 - SMc02361 0.76 -0.8 1,108,822 + SMc02361 0.87 -0.4 1,108,822 + SMc02361 0.87 -1.4 1,108,822 + SMc02361 0.87 +1.7 1,109,070 + SMc02362 0.24 -2.8 1,109,220 + SMc02362 0.57 -3.3 1,109,340 + SMc02362 0.83 -3.3 1,109,340 + SMc02362 0.83 -1.8 1,111,058 + SMc02363 0.81 -2.6 1,111,199 + SMc02363 0.88 -2.5 1,111,199 + SMc02363 0.88 -2.5 1,111,200 - SMc02363 0.88 -2.5 1,111,433 - -0.7 1,111,440 - -1.3 1,112,026 - +1.1 1,112,057 + +2.6 1,112,058 - +2.0 1,112,058 - +2.0 1,112,072 + -0.2 1,112,073 - +2.4 1,112,223 + +2.3 1,112,223 + +3.1 1,112,223 + +2.1 1,112,223 + +1.6
Or see this region's nucleotide sequence