Strain Fitness in Sinorhizobium meliloti 1021 around SMc02363

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02361 and SMc02362 overlap by 4 nucleotidesSMc02362 and SMc02363 overlap by 4 nucleotidesSMc02363 and SMc02364 are separated by 60 nucleotidesSMc02364 and SMc02365 are separated by 299 nucleotides SMc02361: SMc02361 - cytochrome C-type biogenesis transmembrane protein, at 1,107,820 to 1,108,965 SMc02361 SMc02362: SMc02362 - cytochrome c-type biogenesis protein CcmE, at 1,108,962 to 1,109,414 SMc02362 SMc02363: SMc02363 - cytochrome C-type biogenesis transmembrane protein, at 1,109,411 to 1,111,441 SMc02363 SMc02364: SMc02364 - cytochrome C-type biogenesis transmembrane protein, at 1,111,502 to 1,111,957 SMc02364 SMc02365: SMc02365 - protease precursor protein, at 1,112,257 to 1,113,771 SMc02365 Position (kb) 1109 1110 1111 1112Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1108.438 kb on - strand, within SMc02361at 1108.438 kb on - strand, within SMc02361at 1108.692 kb on + strand, within SMc02361at 1108.693 kb on - strand, within SMc02361at 1108.822 kb on + strand, within SMc02361at 1108.822 kb on + strand, within SMc02361at 1108.822 kb on + strand, within SMc02361at 1109.070 kb on + strand, within SMc02362at 1109.220 kb on + strand, within SMc02362at 1109.340 kb on + strand, within SMc02362at 1109.340 kb on + strand, within SMc02362at 1111.058 kb on + strand, within SMc02363at 1111.199 kb on + strand, within SMc02363at 1111.199 kb on + strand, within SMc02363at 1111.200 kb on - strand, within SMc02363at 1111.433 kb on - strandat 1111.440 kb on - strandat 1112.026 kb on - strandat 1112.057 kb on + strandat 1112.058 kb on - strandat 1112.058 kb on - strandat 1112.072 kb on + strandat 1112.073 kb on - strandat 1112.223 kb on + strandat 1112.223 kb on + strandat 1112.223 kb on + strandat 1112.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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1,108,438 - SMc02361 0.54 +0.2
1,108,438 - SMc02361 0.54 -1.8
1,108,692 + SMc02361 0.76 +1.8
1,108,693 - SMc02361 0.76 -0.8
1,108,822 + SMc02361 0.87 -0.4
1,108,822 + SMc02361 0.87 -1.4
1,108,822 + SMc02361 0.87 +1.7
1,109,070 + SMc02362 0.24 -2.8
1,109,220 + SMc02362 0.57 -3.3
1,109,340 + SMc02362 0.83 -3.3
1,109,340 + SMc02362 0.83 -1.8
1,111,058 + SMc02363 0.81 -2.6
1,111,199 + SMc02363 0.88 -2.5
1,111,199 + SMc02363 0.88 -2.5
1,111,200 - SMc02363 0.88 -2.5
1,111,433 - -0.7
1,111,440 - -1.3
1,112,026 - +1.1
1,112,057 + +2.6
1,112,058 - +2.0
1,112,058 - +2.0
1,112,072 + -0.2
1,112,073 - +2.4
1,112,223 + +2.3
1,112,223 + +3.1
1,112,223 + +2.1
1,112,223 + +1.6

Or see this region's nucleotide sequence