Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02232 and SMc02234 overlap by 1 nucleotides SMc02234 and SMc02235 are separated by 98 nucleotides SMc02235 and SMc02236 are separated by 119 nucleotides
SMc02232: SMc02232 - hypothetical protein, at 597,695 to 598,621
SMc02232
SMc02234: SMc02234 - hypothetical protein, at 598,621 to 599,424
SMc02234
SMc02235: SMc02235 - transcriptional regulator, at 599,523 to 599,759
SMc02235
SMc02236: SMc02236 - DNA repair nuclease, ligase-associated (TIGR04123) <small>(from data)</small>, at 599,879 to 600,607
SMc02236
Position (kb) 598
599
600 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 597.705 kb on - strand at 597.831 kb on - strand, within SMc02232 at 597.932 kb on - strand, within SMc02232 at 598.047 kb on - strand, within SMc02232 at 598.054 kb on - strand, within SMc02232 at 598.311 kb on - strand, within SMc02232 at 598.589 kb on + strand at 598.599 kb on + strand at 598.848 kb on + strand, within SMc02234 at 598.927 kb on - strand, within SMc02234 at 599.138 kb on - strand, within SMc02234 at 599.243 kb on - strand, within SMc02234 at 599.323 kb on - strand, within SMc02234 at 599.354 kb on - strand at 599.568 kb on + strand, within SMc02235 at 599.568 kb on + strand, within SMc02235 at 599.568 kb on + strand, within SMc02235 at 599.569 kb on - strand, within SMc02235 at 599.569 kb on - strand, within SMc02235 at 599.569 kb on - strand, within SMc02235 at 599.616 kb on + strand, within SMc02235 at 599.617 kb on - strand, within SMc02235 at 599.617 kb on - strand, within SMc02235 at 599.634 kb on + strand, within SMc02235 at 599.634 kb on + strand, within SMc02235 at 599.635 kb on - strand, within SMc02235 at 599.656 kb on - strand, within SMc02235 at 599.656 kb on - strand, within SMc02235 at 599.757 kb on + strand at 599.758 kb on - strand at 599.825 kb on + strand at 599.825 kb on + strand at 599.826 kb on - strand at 599.850 kb on + strand at 599.910 kb on + strand at 599.911 kb on - strand at 599.911 kb on - strand at 600.400 kb on + strand, within SMc02236 at 600.400 kb on + strand, within SMc02236 at 600.400 kb on + strand, within SMc02236 at 600.401 kb on - strand, within SMc02236 at 600.405 kb on + strand, within SMc02236 at 600.405 kb on + strand, within SMc02236 at 600.405 kb on + strand, within SMc02236
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 597,705 - -1.2 597,831 - SMc02232 0.15 -3.5 597,932 - SMc02232 0.26 -0.8 598,047 - SMc02232 0.38 -0.9 598,054 - SMc02232 0.39 -3.9 598,311 - SMc02232 0.66 -1.4 598,589 + -1.5 598,599 + -0.1 598,848 + SMc02234 0.28 -1.0 598,927 - SMc02234 0.38 -1.0 599,138 - SMc02234 0.64 -3.5 599,243 - SMc02234 0.77 -1.4 599,323 - SMc02234 0.87 -2.1 599,354 - +0.7 599,568 + SMc02235 0.19 -0.2 599,568 + SMc02235 0.19 -2.2 599,568 + SMc02235 0.19 +1.1 599,569 - SMc02235 0.19 -0.2 599,569 - SMc02235 0.19 +0.1 599,569 - SMc02235 0.19 +0.9 599,616 + SMc02235 0.39 -1.2 599,617 - SMc02235 0.40 -0.5 599,617 - SMc02235 0.40 +0.1 599,634 + SMc02235 0.47 -0.7 599,634 + SMc02235 0.47 +1.4 599,635 - SMc02235 0.47 -0.8 599,656 - SMc02235 0.56 -0.0 599,656 - SMc02235 0.56 +0.0 599,757 + +0.9 599,758 - +0.5 599,825 + +1.3 599,825 + -2.3 599,826 - +0.5 599,850 + +0.8 599,910 + +0.4 599,911 - -0.9 599,911 - -0.1 600,400 + SMc02236 0.71 -0.3 600,400 + SMc02236 0.71 -2.8 600,400 + SMc02236 0.71 -0.5 600,401 - SMc02236 0.72 +0.6 600,405 + SMc02236 0.72 +1.5 600,405 + SMc02236 0.72 +0.4 600,405 + SMc02236 0.72 -0.7
Or see this region's nucleotide sequence