Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02104 and SMc02103 are separated by 13 nucleotides SMc02103 and SMc02102 are separated by 141 nucleotides SMc02102 and SMc02101 are separated by 185 nucleotides
SMc02104: SMc02104 - hypothetical protein, at 1,605,408 to 1,606,133
SMc02104
SMc02103: SMc02103 - hypothetical protein, at 1,606,147 to 1,606,611
SMc02103
SMc02102: SMc02102 - hypothetical protein, at 1,606,753 to 1,607,571
SMc02102
SMc02101: SMc02101 - 30S ribosomal protein S2, at 1,607,757 to 1,608,524
SMc02101
Position (kb)
1606
1607
1608 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1606.125 kb on - strand at 1606.503 kb on - strand, within SMc02103 at 1606.527 kb on - strand, within SMc02103 at 1606.527 kb on - strand, within SMc02103 at 1606.536 kb on - strand, within SMc02103 at 1606.536 kb on - strand, within SMc02103 at 1606.909 kb on + strand, within SMc02102 at 1606.909 kb on + strand, within SMc02102 at 1606.924 kb on + strand, within SMc02102 at 1606.954 kb on + strand, within SMc02102 at 1606.955 kb on - strand, within SMc02102 at 1606.955 kb on - strand, within SMc02102 at 1607.033 kb on - strand, within SMc02102 at 1607.386 kb on + strand, within SMc02102 at 1607.386 kb on + strand, within SMc02102 at 1607.569 kb on + strand at 1607.569 kb on + strand at 1607.570 kb on - strand at 1607.570 kb on - strand at 1607.570 kb on - strand at 1607.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,606,125 - -2.3 1,606,503 - SMc02103 0.77 -0.3 1,606,527 - SMc02103 0.82 -0.0 1,606,527 - SMc02103 0.82 +0.4 1,606,536 - SMc02103 0.84 +0.3 1,606,536 - SMc02103 0.84 +0.9 1,606,909 + SMc02102 0.19 -3.9 1,606,909 + SMc02102 0.19 -2.9 1,606,924 + SMc02102 0.21 -2.7 1,606,954 + SMc02102 0.25 -1.0 1,606,955 - SMc02102 0.25 -1.4 1,606,955 - SMc02102 0.25 +1.5 1,607,033 - SMc02102 0.34 -2.7 1,607,386 + SMc02102 0.77 -1.2 1,607,386 + SMc02102 0.77 -1.2 1,607,569 + +0.1 1,607,569 + -1.6 1,607,570 - +0.2 1,607,570 - -2.2 1,607,570 - -0.8 1,607,570 - +0.2
Or see this region's nucleotide sequence