Strain Fitness in Sinorhizobium meliloti 1021 around SMc01349

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01350 and SMc01349 are separated by 2 nucleotidesSMc01349 and SMc01348 are separated by 161 nucleotidesSMc01348 and SMc01347 are separated by 118 nucleotides SMc01350: SMc01350 - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 1,431,144 to 1,432,694 SMc01350 SMc01349: SMc01349 - hypothetical protein, at 1,432,697 to 1,433,194 SMc01349 SMc01348: SMc01348 - NADH dehydrogenase, at 1,433,356 to 1,433,757 SMc01348 SMc01347: SMc01347 - hypothetical protein, at 1,433,876 to 1,434,328 SMc01347 Position (kb) 1432 1433 1434Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1432.775 kb on + strand, within SMc01349at 1432.775 kb on + strand, within SMc01349at 1432.788 kb on - strand, within SMc01349at 1432.788 kb on - strand, within SMc01349at 1432.967 kb on + strand, within SMc01349at 1432.967 kb on + strand, within SMc01349at 1432.967 kb on + strand, within SMc01349at 1432.967 kb on + strand, within SMc01349at 1432.968 kb on - strand, within SMc01349at 1432.968 kb on - strand, within SMc01349at 1432.968 kb on - strand, within SMc01349at 1432.968 kb on - strand, within SMc01349at 1432.968 kb on - strand, within SMc01349at 1433.614 kb on + strand, within SMc01348at 1433.615 kb on - strand, within SMc01348at 1433.732 kb on - strandat 1433.732 kb on - strandat 1434.059 kb on + strand, within SMc01347at 1434.059 kb on + strand, within SMc01347at 1434.060 kb on - strand, within SMc01347at 1434.060 kb on - strand, within SMc01347at 1434.060 kb on - strand, within SMc01347at 1434.062 kb on - strand, within SMc01347

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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1,432,775 + SMc01349 0.16 +1.0
1,432,775 + SMc01349 0.16 +0.7
1,432,788 - SMc01349 0.18 +0.2
1,432,788 - SMc01349 0.18 -0.6
1,432,967 + SMc01349 0.54 -0.8
1,432,967 + SMc01349 0.54 +0.6
1,432,967 + SMc01349 0.54 -0.1
1,432,967 + SMc01349 0.54 +0.4
1,432,968 - SMc01349 0.54 +1.1
1,432,968 - SMc01349 0.54 +0.5
1,432,968 - SMc01349 0.54 -1.1
1,432,968 - SMc01349 0.54 +1.9
1,432,968 - SMc01349 0.54 -0.3
1,433,614 + SMc01348 0.64 -1.8
1,433,615 - SMc01348 0.64 -1.4
1,433,732 - +1.0
1,433,732 - +0.9
1,434,059 + SMc01347 0.40 +0.6
1,434,059 + SMc01347 0.40 -3.6
1,434,060 - SMc01347 0.41 -0.9
1,434,060 - SMc01347 0.41 -1.1
1,434,060 - SMc01347 0.41 -1.5
1,434,062 - SMc01347 0.41 +0.6

Or see this region's nucleotide sequence