Strain Fitness in Sinorhizobium meliloti 1021 around SMc01218

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01219 and SMc01218 are separated by 83 nucleotidesSMc01218 and SMc01217 are separated by 292 nucleotides SMc01219: SMc01219 - lipopolysaccharide core biosynthesis mannosyltransferase, at 1,705,047 to 1,706,102 SMc01219 SMc01218: SMc01218 - transcription elongation factor GreA, at 1,706,186 to 1,706,662 SMc01218 SMc01217: SMc01217 - transport transmembrane protein, at 1,706,955 to 1,708,424 SMc01217 Position (kb) 1706 1707Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1706.775 kb on - strandat 1706.775 kb on - strandat 1706.775 kb on - strandat 1706.882 kb on - strandat 1706.882 kb on - strandat 1706.882 kb on - strandat 1706.892 kb on + strandat 1706.915 kb on + strandat 1706.915 kb on + strandat 1706.916 kb on - strandat 1706.933 kb on - strandat 1706.939 kb on + strandat 1706.940 kb on - strandat 1706.940 kb on - strandat 1706.962 kb on + strandat 1707.189 kb on + strand, within SMc01217at 1707.368 kb on + strand, within SMc01217at 1707.369 kb on - strand, within SMc01217at 1707.369 kb on - strand, within SMc01217at 1707.387 kb on + strand, within SMc01217at 1707.387 kb on + strand, within SMc01217at 1707.388 kb on - strand, within SMc01217at 1707.454 kb on + strand, within SMc01217at 1707.507 kb on + strand, within SMc01217at 1707.507 kb on + strand, within SMc01217at 1707.507 kb on + strand, within SMc01217at 1707.508 kb on - strand, within SMc01217at 1707.542 kb on - strand, within SMc01217at 1707.658 kb on + strand, within SMc01217at 1707.658 kb on + strand, within SMc01217at 1707.659 kb on - strand, within SMc01217at 1707.659 kb on - strand, within SMc01217

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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1,706,775 - +1.1
1,706,775 - +2.1
1,706,775 - +0.7
1,706,882 - -1.5
1,706,882 - -2.3
1,706,882 - +2.4
1,706,892 + -0.9
1,706,915 + -0.4
1,706,915 + -0.7
1,706,916 - -3.5
1,706,933 - -3.8
1,706,939 + +1.1
1,706,940 - -3.9
1,706,940 - -5.1
1,706,962 + +2.7
1,707,189 + SMc01217 0.16 -4.4
1,707,368 + SMc01217 0.28 -4.1
1,707,369 - SMc01217 0.28 -3.6
1,707,369 - SMc01217 0.28 -3.2
1,707,387 + SMc01217 0.29 -4.9
1,707,387 + SMc01217 0.29 -2.9
1,707,388 - SMc01217 0.29 -3.1
1,707,454 + SMc01217 0.34 -2.0
1,707,507 + SMc01217 0.38 -4.3
1,707,507 + SMc01217 0.38 -1.9
1,707,507 + SMc01217 0.38 -2.3
1,707,508 - SMc01217 0.38 -1.2
1,707,542 - SMc01217 0.40 -3.7
1,707,658 + SMc01217 0.48 -2.7
1,707,658 + SMc01217 0.48 -5.1
1,707,659 - SMc01217 0.48 -6.0
1,707,659 - SMc01217 0.48 -4.8

Or see this region's nucleotide sequence