Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01125 and SMc01124 are separated by 101 nucleotides SMc01124 and SMc01123 overlap by 4 nucleotides
SMc01125: SMc01125 - DNA mismatch repair protein MutS, at 426,755 to 429,505
SMc01125
SMc01124: SMc01124 - PII uridylyl-transferase, at 429,607 to 432,456
SMc01124
SMc01123: SMc01123 - virulence factor MviN-like protein, at 432,453 to 434,060
SMc01123
Position (kb) 429
430
431
432
433 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 428.846 kb on - strand, within SMc01125 at 429.193 kb on - strand, within SMc01125 at 429.219 kb on - strand, within SMc01125 at 429.219 kb on - strand, within SMc01125 at 429.219 kb on - strand, within SMc01125 at 429.474 kb on - strand at 429.518 kb on - strand at 429.549 kb on + strand at 429.577 kb on + strand at 429.577 kb on + strand at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.150 kb on + strand, within SMc01124 at 430.150 kb on + strand, within SMc01124 at 430.703 kb on + strand, within SMc01124 at 430.703 kb on + strand, within SMc01124 at 430.811 kb on + strand, within SMc01124 at 430.953 kb on + strand, within SMc01124 at 430.955 kb on + strand, within SMc01124 at 430.955 kb on + strand, within SMc01124 at 431.071 kb on + strand, within SMc01124 at 431.071 kb on + strand, within SMc01124 at 431.071 kb on + strand, within SMc01124 at 431.071 kb on + strand, within SMc01124 at 431.388 kb on + strand, within SMc01124 at 431.536 kb on + strand, within SMc01124 at 431.539 kb on + strand, within SMc01124 at 431.539 kb on + strand, within SMc01124 at 431.662 kb on + strand, within SMc01124 at 431.662 kb on + strand, within SMc01124 at 431.686 kb on + strand, within SMc01124 at 431.686 kb on + strand, within SMc01124 at 431.991 kb on + strand, within SMc01124 at 432.117 kb on + strand, within SMc01124 at 432.268 kb on + strand at 432.268 kb on + strand at 432.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 428,846 - SMc01125 0.76 +1.0 429,193 - SMc01125 0.89 -0.4 429,219 - SMc01125 0.90 -0.2 429,219 - SMc01125 0.90 +0.6 429,219 - SMc01125 0.90 -1.9 429,474 - -1.3 429,518 - +1.0 429,549 + +0.9 429,577 + +0.9 429,577 + -2.3 430,036 + SMc01124 0.15 +1.1 430,036 + SMc01124 0.15 +2.6 430,036 + SMc01124 0.15 +1.9 430,036 + SMc01124 0.15 +1.9 430,036 + SMc01124 0.15 +2.0 430,036 + SMc01124 0.15 -2.1 430,036 + SMc01124 0.15 +2.0 430,150 + SMc01124 0.19 +2.5 430,150 + SMc01124 0.19 +1.3 430,703 + SMc01124 0.38 +0.5 430,703 + SMc01124 0.38 +0.2 430,811 + SMc01124 0.42 +2.9 430,953 + SMc01124 0.47 +1.4 430,955 + SMc01124 0.47 +0.8 430,955 + SMc01124 0.47 +2.8 431,071 + SMc01124 0.51 +1.1 431,071 + SMc01124 0.51 +1.7 431,071 + SMc01124 0.51 +1.1 431,071 + SMc01124 0.51 +0.6 431,388 + SMc01124 0.62 +0.9 431,536 + SMc01124 0.68 +2.3 431,539 + SMc01124 0.68 -0.2 431,539 + SMc01124 0.68 +0.8 431,662 + SMc01124 0.72 -2.0 431,662 + SMc01124 0.72 +1.0 431,686 + SMc01124 0.73 +0.9 431,686 + SMc01124 0.73 +2.3 431,991 + SMc01124 0.84 +1.4 432,117 + SMc01124 0.88 +0.0 432,268 + -0.1 432,268 + -0.3 432,268 + +0.2
Or see this region's nucleotide sequence