Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00982 and SMc00981 are separated by 2 nucleotides SMc00981 and SMc00980 are separated by 1 nucleotides
SMc00982: SMc00982 - dioxygenase, at 955,077 to 956,321
SMc00982
SMc00981: SMc00981 - ferredoxin protein, at 956,324 to 957,418
SMc00981
SMc00980: SMc00980 - hypothetical protein, at 957,420 to 958,445
SMc00980
Position (kb) 956
957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 955.411 kb on - strand, within SMc00982 at 955.411 kb on - strand, within SMc00982 at 955.680 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.887 kb on + strand, within SMc00982 at 955.888 kb on - strand, within SMc00982 at 955.889 kb on + strand, within SMc00982 at 956.103 kb on + strand, within SMc00982 at 956.214 kb on + strand at 956.534 kb on + strand, within SMc00981 at 956.534 kb on + strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.536 kb on + strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.705 kb on + strand, within SMc00981 at 957.068 kb on + strand, within SMc00981 at 957.365 kb on + strand at 957.365 kb on + strand at 957.534 kb on + strand, within SMc00980 at 957.705 kb on + strand, within SMc00980 at 957.706 kb on - strand, within SMc00980 at 957.706 kb on - strand, within SMc00980 at 957.819 kb on - strand, within SMc00980 at 957.844 kb on + strand, within SMc00980 at 957.845 kb on - strand, within SMc00980 at 957.922 kb on + strand, within SMc00980 at 957.922 kb on + strand, within SMc00980 at 957.923 kb on - strand, within SMc00980 at 957.994 kb on + strand, within SMc00980 at 957.994 kb on + strand, within SMc00980 at 957.995 kb on - strand, within SMc00980 at 958.057 kb on + strand, within SMc00980 at 958.112 kb on - strand, within SMc00980 at 958.163 kb on - strand, within SMc00980 at 958.163 kb on - strand, within SMc00980 at 958.163 kb on - strand, within SMc00980 at 958.218 kb on - strand, within SMc00980 at 958.238 kb on + strand, within SMc00980 at 958.239 kb on - strand, within SMc00980 at 958.339 kb on + strand, within SMc00980 at 958.339 kb on + strand, within SMc00980 at 958.339 kb on + strand, within SMc00980 at 958.340 kb on - strand, within SMc00980
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 955,411 - SMc00982 0.27 -1.1 955,411 - SMc00982 0.27 -1.1 955,680 + SMc00982 0.48 -1.4 955,715 + SMc00982 0.51 -0.2 955,715 + SMc00982 0.51 -1.6 955,715 + SMc00982 0.51 -2.1 955,715 + SMc00982 0.51 -2.8 955,887 + SMc00982 0.65 -3.5 955,888 - SMc00982 0.65 +1.3 955,889 + SMc00982 0.65 -1.4 956,103 + SMc00982 0.82 -0.2 956,214 + -0.3 956,534 + SMc00981 0.19 -2.1 956,534 + SMc00981 0.19 -3.2 956,535 - SMc00981 0.19 -0.9 956,535 - SMc00981 0.19 -1.0 956,535 - SMc00981 0.19 -1.5 956,536 + SMc00981 0.19 -1.1 956,537 - SMc00981 0.19 -1.5 956,537 - SMc00981 0.19 -1.9 956,537 - SMc00981 0.19 -1.0 956,705 + SMc00981 0.35 +0.2 957,068 + SMc00981 0.68 -1.7 957,365 + +0.2 957,365 + -1.9 957,534 + SMc00980 0.11 -0.7 957,705 + SMc00980 0.28 -1.6 957,706 - SMc00980 0.28 -1.9 957,706 - SMc00980 0.28 -0.4 957,819 - SMc00980 0.39 +0.2 957,844 + SMc00980 0.41 -0.2 957,845 - SMc00980 0.41 +1.4 957,922 + SMc00980 0.49 -0.4 957,922 + SMc00980 0.49 -1.3 957,923 - SMc00980 0.49 -3.2 957,994 + SMc00980 0.56 -0.3 957,994 + SMc00980 0.56 +1.3 957,995 - SMc00980 0.56 +1.3 958,057 + SMc00980 0.62 -2.3 958,112 - SMc00980 0.67 +0.2 958,163 - SMc00980 0.72 -0.2 958,163 - SMc00980 0.72 +0.2 958,163 - SMc00980 0.72 -0.0 958,218 - SMc00980 0.78 +1.0 958,238 + SMc00980 0.80 -0.0 958,239 - SMc00980 0.80 +1.1 958,339 + SMc00980 0.90 -0.3 958,339 + SMc00980 0.90 -1.2 958,339 + SMc00980 0.90 -0.0 958,340 - SMc00980 0.90 +1.2
Or see this region's nucleotide sequence