Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00955 and SMc00959 are separated by 485 nucleotides SMc00959 and SMc00956 are separated by 3 nucleotides SMc00956 and SMc00958 overlap by 4 nucleotides
SMc00955: SMc00955 - hypothetical protein, at 1,784,287 to 1,785,462
SMc00955
SMc00959: SMc00959 - hypothetical protein, at 1,785,948 to 1,786,124
SMc00959
SMc00956: SMc00956 - exodeoxyribonuclease III protein, at 1,786,128 to 1,786,922
SMc00956
SMc00958: SMc00958 - hypothetical protein, at 1,786,919 to 1,787,137
SMc00958
Position (kb)
1785
1786
1787 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1785.033 kb on + strand, within SMc00955 at 1785.033 kb on + strand, within SMc00955 at 1785.033 kb on + strand, within SMc00955 at 1785.034 kb on - strand, within SMc00955 at 1785.034 kb on - strand, within SMc00955 at 1785.134 kb on - strand, within SMc00955 at 1785.340 kb on - strand, within SMc00955 at 1785.412 kb on + strand at 1785.594 kb on - strand at 1785.598 kb on + strand at 1785.598 kb on + strand at 1785.638 kb on - strand at 1785.668 kb on + strand at 1785.668 kb on + strand at 1785.668 kb on + strand at 1785.669 kb on - strand at 1785.689 kb on + strand at 1785.690 kb on - strand at 1785.798 kb on + strand at 1785.798 kb on + strand at 1785.799 kb on - strand at 1785.799 kb on - strand at 1785.801 kb on + strand at 1785.802 kb on - strand at 1785.802 kb on - strand at 1785.893 kb on + strand at 1785.894 kb on - strand at 1785.990 kb on + strand, within SMc00959 at 1785.991 kb on - strand, within SMc00959 at 1786.143 kb on + strand at 1786.143 kb on + strand at 1786.144 kb on - strand at 1786.395 kb on - strand, within SMc00956 at 1786.402 kb on - strand, within SMc00956 at 1786.404 kb on - strand, within SMc00956 at 1786.443 kb on + strand, within SMc00956 at 1786.484 kb on - strand, within SMc00956 at 1786.485 kb on + strand, within SMc00956 at 1786.485 kb on + strand, within SMc00956 at 1786.486 kb on - strand, within SMc00956 at 1786.569 kb on + strand, within SMc00956 at 1786.570 kb on - strand, within SMc00956 at 1786.570 kb on - strand, within SMc00956 at 1786.570 kb on - strand, within SMc00956 at 1786.656 kb on + strand, within SMc00956 at 1786.656 kb on + strand, within SMc00956 at 1786.656 kb on + strand, within SMc00956 at 1786.737 kb on + strand, within SMc00956 at 1786.738 kb on - strand, within SMc00956 at 1786.738 kb on - strand, within SMc00956 at 1786.738 kb on - strand, within SMc00956 at 1786.738 kb on - strand, within SMc00956 at 1787.012 kb on + strand, within SMc00958
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,785,033 + SMc00955 0.63 -0.6 1,785,033 + SMc00955 0.63 -0.1 1,785,033 + SMc00955 0.63 +0.2 1,785,034 - SMc00955 0.64 -0.6 1,785,034 - SMc00955 0.64 -0.2 1,785,134 - SMc00955 0.72 -0.5 1,785,340 - SMc00955 0.90 -0.2 1,785,412 + -0.1 1,785,594 - -0.3 1,785,598 + +0.1 1,785,598 + +0.0 1,785,638 - +0.2 1,785,668 + +0.5 1,785,668 + -0.4 1,785,668 + -0.5 1,785,669 - -1.2 1,785,689 + -1.8 1,785,690 - +0.1 1,785,798 + -1.0 1,785,798 + -0.4 1,785,799 - -1.2 1,785,799 - +0.2 1,785,801 + +0.1 1,785,802 - -1.8 1,785,802 - +1.8 1,785,893 + -0.2 1,785,894 - -1.8 1,785,990 + SMc00959 0.24 -0.7 1,785,991 - SMc00959 0.24 -1.2 1,786,143 + -0.4 1,786,143 + -1.6 1,786,144 - -1.1 1,786,395 - SMc00956 0.34 +0.6 1,786,402 - SMc00956 0.34 -0.0 1,786,404 - SMc00956 0.35 +0.2 1,786,443 + SMc00956 0.40 -1.0 1,786,484 - SMc00956 0.45 +1.1 1,786,485 + SMc00956 0.45 -2.2 1,786,485 + SMc00956 0.45 -0.6 1,786,486 - SMc00956 0.45 -1.0 1,786,569 + SMc00956 0.55 +0.7 1,786,570 - SMc00956 0.56 +0.7 1,786,570 - SMc00956 0.56 +0.1 1,786,570 - SMc00956 0.56 -0.9 1,786,656 + SMc00956 0.66 +0.4 1,786,656 + SMc00956 0.66 +0.4 1,786,656 + SMc00956 0.66 -1.5 1,786,737 + SMc00956 0.77 +0.3 1,786,738 - SMc00956 0.77 -0.3 1,786,738 - SMc00956 0.77 +0.5 1,786,738 - SMc00956 0.77 -0.7 1,786,738 - SMc00956 0.77 -0.1 1,787,012 + SMc00958 0.42 +1.3
Or see this region's nucleotide sequence