Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00649 and SMc00648 are separated by 4 nucleotides SMc00648 and SMc00647 are separated by 29 nucleotides SMc00647 and SMc00646 are separated by 197 nucleotides
SMc00649: SMc00649 - tRNA/rRNA methyltransferase, at 2,926,861 to 2,927,688
SMc00649
SMc00648: SMc00648 - hypothetical protein, at 2,927,693 to 2,928,076
SMc00648
SMc00647: SMc00647 - ribosomal large subunit pseudouridine synthase, at 2,928,106 to 2,929,137
SMc00647
SMc00646: SMc00646 - RNA polymerase factor sigma-32, at 2,929,335 to 2,930,240
SMc00646
Position (kb)
2928
2929
2930 Strain fitness (log2 ratio)
-1
0
1
2 at 2927.192 kb on + strand, within SMc00649 at 2927.192 kb on + strand, within SMc00649 at 2927.192 kb on + strand, within SMc00649 at 2927.271 kb on + strand, within SMc00649 at 2927.271 kb on + strand, within SMc00649 at 2927.287 kb on + strand, within SMc00649 at 2927.323 kb on + strand, within SMc00649 at 2927.324 kb on - strand, within SMc00649 at 2927.438 kb on + strand, within SMc00649 at 2927.439 kb on - strand, within SMc00649 at 2927.439 kb on - strand, within SMc00649 at 2927.858 kb on + strand, within SMc00648 at 2927.859 kb on - strand, within SMc00648 at 2927.931 kb on + strand, within SMc00648 at 2927.956 kb on + strand, within SMc00648 at 2927.956 kb on + strand, within SMc00648 at 2928.120 kb on + strand at 2928.877 kb on - strand, within SMc00647 at 2928.938 kb on - strand, within SMc00647 at 2929.162 kb on + strand at 2929.162 kb on + strand at 2929.163 kb on - strand at 2929.163 kb on - strand at 2929.164 kb on + strand at 2929.164 kb on + strand at 2929.164 kb on + strand at 2929.247 kb on + strand at 2929.247 kb on + strand at 2929.247 kb on + strand at 2929.251 kb on + strand at 2929.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 2,927,192 + SMc00649 0.40 -0.5 2,927,192 + SMc00649 0.40 +0.6 2,927,192 + SMc00649 0.40 +0.7 2,927,271 + SMc00649 0.50 +1.5 2,927,271 + SMc00649 0.50 -0.7 2,927,287 + SMc00649 0.51 -0.5 2,927,323 + SMc00649 0.56 -0.2 2,927,324 - SMc00649 0.56 -0.4 2,927,438 + SMc00649 0.70 -0.0 2,927,439 - SMc00649 0.70 +0.1 2,927,439 - SMc00649 0.70 +0.8 2,927,858 + SMc00648 0.43 +1.2 2,927,859 - SMc00648 0.43 +0.9 2,927,931 + SMc00648 0.62 +0.5 2,927,956 + SMc00648 0.68 +0.8 2,927,956 + SMc00648 0.68 +1.1 2,928,120 + +1.4 2,928,877 - SMc00647 0.75 +1.6 2,928,938 - SMc00647 0.81 +2.1 2,929,162 + +0.8 2,929,162 + +0.6 2,929,163 - -0.3 2,929,163 - -0.5 2,929,164 + +0.9 2,929,164 + -0.1 2,929,164 + +0.7 2,929,247 + +1.0 2,929,247 + +0.9 2,929,247 + +0.9 2,929,251 + +1.0 2,929,251 + -0.6
Or see this region's nucleotide sequence