Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00395 and SMc00396 overlap by 4 nucleotides SMc00396 and SMc00397 are separated by 151 nucleotides SMc00397 and SMc00460 overlap by 52 nucleotides
SMc00395: SMc00395 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 345,628 to 346,266
SMc00395
SMc00396: SMc00396 - hypothetical protein, at 346,263 to 346,715
SMc00396
SMc00397: SMc00397 - hypothetical protein, at 346,867 to 347,427
SMc00397
SMc00460: SMc00460 - hypothetical protein, at 347,376 to 348,509
SMc00460
Position (kb) 346
347
348 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 346.132 kb on + strand, within SMc00395 at 346.200 kb on - strand, within SMc00395 at 346.223 kb on + strand at 346.223 kb on + strand at 346.223 kb on + strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.355 kb on - strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.508 kb on - strand, within SMc00396 at 346.798 kb on + strand at 346.799 kb on - strand at 346.799 kb on - strand at 346.864 kb on + strand at 346.864 kb on + strand at 346.865 kb on - strand at 346.865 kb on - strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.875 kb on + strand at 346.994 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.170 kb on + strand, within SMc00397 at 347.171 kb on - strand, within SMc00397 at 347.302 kb on + strand, within SMc00397 at 347.377 kb on + strand at 347.378 kb on - strand at 347.495 kb on - strand, within SMc00460 at 347.548 kb on - strand, within SMc00460 at 347.548 kb on - strand, within SMc00460 at 347.665 kb on + strand, within SMc00460 at 347.666 kb on - strand, within SMc00460 at 347.666 kb on - strand, within SMc00460 at 347.773 kb on + strand, within SMc00460 at 347.773 kb on + strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand, within SMc00460 at 347.774 kb on - strand at 347.889 kb on + strand, within SMc00460 at 348.028 kb on + strand, within SMc00460 at 348.029 kb on - strand, within SMc00460 at 348.073 kb on + strand, within SMc00460 at 348.074 kb on - strand, within SMc00460 at 348.121 kb on + strand, within SMc00460 at 348.121 kb on + strand, within SMc00460 at 348.232 kb on + strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460 at 348.233 kb on - strand, within SMc00460
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 346,132 + SMc00395 0.79 +0.3 346,200 - SMc00395 0.90 +1.4 346,223 + -0.7 346,223 + -1.7 346,223 + +0.1 346,224 - +0.1 346,224 - +1.1 346,224 - +0.1 346,355 - SMc00396 0.20 -2.0 346,507 + SMc00396 0.54 -1.2 346,507 + SMc00396 0.54 +1.2 346,507 + SMc00396 0.54 +0.4 346,508 - SMc00396 0.54 -3.9 346,798 + -0.5 346,799 - +1.8 346,799 - +0.7 346,864 + -1.3 346,864 + +2.4 346,865 - -0.0 346,865 - +1.7 346,866 + +0.7 346,866 + -0.0 346,866 + +3.4 346,866 + +1.2 346,866 + +0.0 346,866 + +0.7 346,866 + -1.2 346,866 + +1.1 346,867 - -0.7 346,867 - +0.1 346,867 - -0.1 346,867 - -0.7 346,867 - +0.3 346,875 + +0.1 346,994 - SMc00397 0.23 -1.5 347,162 - SMc00397 0.53 -2.7 347,162 - SMc00397 0.53 +0.2 347,162 - SMc00397 0.53 +0.6 347,170 + SMc00397 0.54 -3.0 347,171 - SMc00397 0.54 -2.1 347,302 + SMc00397 0.78 -1.2 347,377 + -0.3 347,378 - +0.3 347,495 - SMc00460 0.10 -0.2 347,548 - SMc00460 0.15 -0.2 347,548 - SMc00460 0.15 +0.6 347,665 + SMc00460 0.25 -1.6 347,666 - SMc00460 0.26 -0.3 347,666 - SMc00460 0.26 -0.2 347,773 + SMc00460 0.35 +0.9 347,773 + SMc00460 0.35 -0.2 347,774 - SMc00460 0.35 -0.0 347,774 - SMc00460 0.35 -0.1 347,774 - SMc00460 0.35 -0.2 347,774 - +1.4 347,889 + SMc00460 0.45 +0.6 348,028 + SMc00460 0.57 +0.0 348,029 - SMc00460 0.58 +2.8 348,073 + SMc00460 0.61 +1.1 348,074 - SMc00460 0.62 -0.1 348,121 + SMc00460 0.66 -1.1 348,121 + SMc00460 0.66 +0.7 348,232 + SMc00460 0.75 +2.0 348,233 - SMc00460 0.76 +0.2 348,233 - SMc00460 0.76 -0.2 348,233 - SMc00460 0.76 -1.1 348,233 - SMc00460 0.76 -0.1 348,233 - SMc00460 0.76 -1.1
Or see this region's nucleotide sequence