Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2147 and SMa2151 are separated by 712 nucleotides
SMa2147: SMa2147 - hypothetical protein, at 1,213,698 to 1,214,588
SMa2147
SMa2151: SMa2151 - DNA-binding protein, at 1,215,301 to 1,215,624
SMa2151
Position (kb)
1215
1216 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1214.363 kb on - strand, within SMa2147 at 1214.384 kb on + strand, within SMa2147 at 1214.384 kb on + strand, within SMa2147 at 1214.520 kb on + strand at 1214.521 kb on - strand at 1214.751 kb on + strand at 1214.752 kb on - strand at 1214.773 kb on + strand at 1214.774 kb on - strand at 1214.788 kb on + strand at 1214.788 kb on + strand at 1214.789 kb on - strand at 1214.789 kb on - strand at 1214.886 kb on + strand at 1214.887 kb on - strand at 1214.899 kb on + strand at 1214.900 kb on - strand at 1214.931 kb on - strand at 1215.153 kb on - strand at 1215.167 kb on + strand at 1215.168 kb on - strand at 1215.287 kb on - strand at 1215.367 kb on + strand, within SMa2151 at 1215.367 kb on + strand, within SMa2151 at 1215.367 kb on + strand, within SMa2151 at 1215.368 kb on - strand, within SMa2151 at 1215.368 kb on - strand, within SMa2151 at 1215.368 kb on - strand, within SMa2151 at 1215.622 kb on + strand at 1215.675 kb on - strand at 1215.734 kb on - strand at 1215.736 kb on + strand at 1215.737 kb on - strand at 1215.737 kb on - strand at 1215.884 kb on + strand at 1215.907 kb on - strand at 1216.034 kb on + strand at 1216.035 kb on - strand at 1216.036 kb on + strand at 1216.036 kb on + strand at 1216.037 kb on - strand at 1216.037 kb on - strand at 1216.037 kb on - strand at 1216.117 kb on - strand at 1216.148 kb on + strand at 1216.149 kb on - strand at 1216.208 kb on + strand at 1216.208 kb on + strand at 1216.236 kb on - strand at 1216.236 kb on - strand at 1216.366 kb on + strand at 1216.366 kb on + strand at 1216.366 kb on + strand at 1216.367 kb on - strand at 1216.367 kb on - strand at 1216.367 kb on - strand at 1216.431 kb on + strand at 1216.473 kb on + strand at 1216.474 kb on - strand at 1216.598 kb on + strand at 1216.599 kb on - strand at 1216.599 kb on - strand at 1216.610 kb on + strand at 1216.610 kb on + strand at 1216.611 kb on - strand at 1216.611 kb on - strand at 1216.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,214,363 - SMa2147 0.75 -1.7 1,214,384 + SMa2147 0.77 -0.6 1,214,384 + SMa2147 0.77 -0.1 1,214,520 + -0.5 1,214,521 - -0.7 1,214,751 + -0.8 1,214,752 - -2.2 1,214,773 + +0.6 1,214,774 - +0.5 1,214,788 + -0.4 1,214,788 + -2.0 1,214,789 - -2.7 1,214,789 - -0.5 1,214,886 + -1.0 1,214,887 - +0.6 1,214,899 + -0.5 1,214,900 - +0.7 1,214,931 - +0.7 1,215,153 - +1.5 1,215,167 + +0.5 1,215,168 - -0.9 1,215,287 - +0.4 1,215,367 + SMa2151 0.20 +0.8 1,215,367 + SMa2151 0.20 +0.9 1,215,367 + SMa2151 0.20 +1.5 1,215,368 - SMa2151 0.21 -2.0 1,215,368 - SMa2151 0.21 +1.1 1,215,368 - SMa2151 0.21 +0.4 1,215,622 + -1.0 1,215,675 - +1.2 1,215,734 - +1.5 1,215,736 + +0.6 1,215,737 - -0.6 1,215,737 - -0.6 1,215,884 + -2.4 1,215,907 - +0.4 1,216,034 + +0.0 1,216,035 - +1.5 1,216,036 + -0.4 1,216,036 + +1.3 1,216,037 - -0.0 1,216,037 - +1.3 1,216,037 - +0.8 1,216,117 - -0.1 1,216,148 + +0.3 1,216,149 - -0.2 1,216,208 + -0.3 1,216,208 + -1.4 1,216,236 - +1.5 1,216,236 - +0.7 1,216,366 + +2.5 1,216,366 + -0.4 1,216,366 + +1.1 1,216,367 - +0.1 1,216,367 - -2.1 1,216,367 - +0.1 1,216,431 + -1.4 1,216,473 + +1.0 1,216,474 - +0.6 1,216,598 + -1.4 1,216,599 - -1.1 1,216,599 - +0.5 1,216,610 + -1.5 1,216,610 + -1.9 1,216,611 - -0.3 1,216,611 - -1.0 1,216,615 + +1.5
Or see this region's nucleotide sequence