Strain Fitness in Sinorhizobium meliloti 1021 around SMa2034

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2033 and SMa2034 are separated by 930 nucleotidesSMa2034 and SMa2037 are separated by 9 nucleotides SMa2033: SMa2033 - Transglycosylase, at 1,149,915 to 1,150,712 SMa2033 SMa2034: SMa2034 - hypothetical protein, at 1,151,643 to 1,151,888 SMa2034 SMa2037: SMa2037 - Oxidoreductase, at 1,151,898 to 1,154,150 SMa2037 Position (kb) 1151 1152Strain fitness (log2 ratio) -2 -1 0 1 2at 1150.718 kb on + strandat 1150.719 kb on - strandat 1150.719 kb on - strandat 1150.719 kb on - strandat 1150.735 kb on - strandat 1151.077 kb on + strandat 1151.106 kb on - strandat 1151.279 kb on + strandat 1151.371 kb on - strandat 1151.376 kb on + strandat 1151.376 kb on + strandat 1151.454 kb on + strandat 1151.508 kb on - strandat 1151.509 kb on + strandat 1151.619 kb on - strandat 1151.717 kb on - strand, within SMa2034at 1151.811 kb on - strand, within SMa2034at 1151.884 kb on - strandat 1151.900 kb on - strandat 1151.942 kb on + strandat 1152.079 kb on - strandat 1152.079 kb on - strandat 1152.083 kb on + strandat 1152.083 kb on + strandat 1152.084 kb on - strandat 1152.154 kb on + strand, within SMa2037at 1152.158 kb on + strand, within SMa2037at 1152.158 kb on + strand, within SMa2037at 1152.158 kb on + strand, within SMa2037at 1152.159 kb on - strand, within SMa2037at 1152.159 kb on - strand, within SMa2037at 1152.159 kb on - strand, within SMa2037at 1152.160 kb on + strand, within SMa2037at 1152.160 kb on + strand, within SMa2037at 1152.161 kb on - strand, within SMa2037at 1152.161 kb on - strand, within SMa2037at 1152.161 kb on - strand, within SMa2037at 1152.208 kb on + strand, within SMa2037at 1152.209 kb on - strand, within SMa2037at 1152.266 kb on - strand, within SMa2037at 1152.317 kb on + strand, within SMa2037at 1152.318 kb on - strand, within SMa2037at 1152.536 kb on + strand, within SMa2037at 1152.537 kb on - strand, within SMa2037

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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1,150,718 + +0.4
1,150,719 - -0.0
1,150,719 - -0.0
1,150,719 - -0.3
1,150,735 - -0.1
1,151,077 + -0.1
1,151,106 - -0.5
1,151,279 + +0.8
1,151,371 - -0.1
1,151,376 + -0.9
1,151,376 + -0.7
1,151,454 + +0.3
1,151,508 - +0.2
1,151,509 + +0.4
1,151,619 - -0.4
1,151,717 - SMa2034 0.30 -1.0
1,151,811 - SMa2034 0.68 -1.9
1,151,884 - +0.7
1,151,900 - +2.2
1,151,942 + -0.7
1,152,079 - -0.1
1,152,079 - +1.2
1,152,083 + -0.2
1,152,083 + +0.6
1,152,084 - -0.9
1,152,154 + SMa2037 0.11 -0.2
1,152,158 + SMa2037 0.12 +0.4
1,152,158 + SMa2037 0.12 +0.5
1,152,158 + SMa2037 0.12 -0.0
1,152,159 - SMa2037 0.12 -0.9
1,152,159 - SMa2037 0.12 +0.7
1,152,159 - SMa2037 0.12 -1.9
1,152,160 + SMa2037 0.12 +0.6
1,152,160 + SMa2037 0.12 +1.7
1,152,161 - SMa2037 0.12 -0.3
1,152,161 - SMa2037 0.12 -0.0
1,152,161 - SMa2037 0.12 +0.6
1,152,208 + SMa2037 0.14 -2.6
1,152,209 - SMa2037 0.14 +0.3
1,152,266 - SMa2037 0.16 -1.4
1,152,317 + SMa2037 0.19 -0.5
1,152,318 - SMa2037 0.19 -1.1
1,152,536 + SMa2037 0.28 -0.8
1,152,537 - SMa2037 0.28 -0.1

Or see this region's nucleotide sequence