Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1893 and SMa1894 are separated by 109 nucleotides SMa1894 and SMa1896 are separated by 0 nucleotides SMa1896 and SMa1898 are separated by 205 nucleotides
SMa1893: SMa1893 - LysR family transcriptional regulator, at 1,075,895 to 1,076,770
SMa1893
SMa1894: SMa1894 - methionine sulfoxide reductase B, at 1,076,880 to 1,077,323
SMa1894
SMa1896: SMa1896 - methionine sulfoxide reductase A, at 1,077,324 to 1,077,830
SMa1896
SMa1898: SMa1898 - hypothetical protein, at 1,078,036 to 1,079,262
SMa1898
Position (kb)
1076
1077
1078 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1075.916 kb on + strand at 1076.040 kb on - strand, within SMa1893 at 1076.168 kb on - strand, within SMa1893 at 1076.275 kb on - strand, within SMa1893 at 1076.315 kb on + strand, within SMa1893 at 1076.315 kb on + strand, within SMa1893 at 1076.316 kb on - strand, within SMa1893 at 1076.316 kb on - strand, within SMa1893 at 1076.326 kb on + strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.463 kb on - strand, within SMa1893 at 1076.469 kb on - strand, within SMa1893 at 1076.659 kb on - strand, within SMa1893 at 1076.802 kb on + strand at 1076.802 kb on + strand at 1076.803 kb on - strand at 1076.803 kb on - strand at 1076.803 kb on - strand at 1076.803 kb on - strand at 1076.887 kb on - strand at 1076.918 kb on + strand at 1076.919 kb on - strand at 1076.980 kb on - strand, within SMa1894 at 1077.006 kb on + strand, within SMa1894 at 1077.006 kb on + strand, within SMa1894 at 1077.228 kb on + strand, within SMa1894 at 1077.228 kb on + strand, within SMa1894 at 1077.288 kb on + strand at 1077.417 kb on + strand, within SMa1896 at 1077.447 kb on + strand, within SMa1896 at 1077.591 kb on + strand, within SMa1896 at 1077.591 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.607 kb on - strand, within SMa1896 at 1077.748 kb on - strand, within SMa1896 at 1077.748 kb on - strand, within SMa1896 at 1077.772 kb on - strand, within SMa1896 at 1077.805 kb on + strand at 1077.853 kb on + strand at 1077.854 kb on - strand at 1077.943 kb on + strand at 1077.943 kb on + strand at 1078.003 kb on + strand at 1078.008 kb on + strand at 1078.009 kb on - strand at 1078.047 kb on + strand at 1078.319 kb on - strand, within SMa1898
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,075,916 + +0.4 1,076,040 - SMa1893 0.17 +1.4 1,076,168 - SMa1893 0.31 +0.2 1,076,275 - SMa1893 0.43 -1.4 1,076,315 + SMa1893 0.48 -0.9 1,076,315 + SMa1893 0.48 +0.5 1,076,316 - SMa1893 0.48 -0.4 1,076,316 - SMa1893 0.48 -0.6 1,076,326 + SMa1893 0.49 +0.2 1,076,327 - SMa1893 0.49 +1.4 1,076,327 - SMa1893 0.49 -1.0 1,076,327 - SMa1893 0.49 +0.5 1,076,463 - SMa1893 0.65 -0.1 1,076,469 - SMa1893 0.66 -0.5 1,076,659 - SMa1893 0.87 +0.2 1,076,802 + -1.4 1,076,802 + +0.3 1,076,803 - -0.0 1,076,803 - +0.5 1,076,803 - +0.1 1,076,803 - +0.1 1,076,887 - +0.4 1,076,918 + -0.9 1,076,919 - +0.2 1,076,980 - SMa1894 0.23 -0.7 1,077,006 + SMa1894 0.28 -1.4 1,077,006 + SMa1894 0.28 -0.6 1,077,228 + SMa1894 0.78 -1.3 1,077,228 + SMa1894 0.78 +0.4 1,077,288 + -2.6 1,077,417 + SMa1896 0.18 +0.6 1,077,447 + SMa1896 0.24 +0.6 1,077,591 + SMa1896 0.53 -0.7 1,077,591 + SMa1896 0.53 -1.2 1,077,606 + SMa1896 0.56 +0.1 1,077,606 + SMa1896 0.56 -0.9 1,077,606 + SMa1896 0.56 +0.5 1,077,606 + SMa1896 0.56 -0.8 1,077,607 - SMa1896 0.56 -0.5 1,077,748 - SMa1896 0.84 +1.8 1,077,748 - SMa1896 0.84 +0.9 1,077,772 - SMa1896 0.88 -0.0 1,077,805 + +0.0 1,077,853 + +0.2 1,077,854 - +0.6 1,077,943 + +0.2 1,077,943 + -0.9 1,078,003 + -0.1 1,078,008 + -1.6 1,078,009 - +0.2 1,078,047 + -0.9 1,078,319 - SMa1898 0.23 -1.4
Or see this region's nucleotide sequence