Strain Fitness in Sinorhizobium meliloti 1021 around SMa1705
Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.3 mg/ml |
---|---|---|---|---|---|
remove | |||||
960,828 | - | SMa1704 | 0.27 | +0.3 | |
960,828 | - | SMa1704 | 0.27 | -0.7 | |
960,828 | - | SMa1704 | 0.27 | -0.0 | |
960,912 | - | SMa1704 | 0.34 | +0.2 | |
961,010 | - | SMa1704 | 0.42 | -0.8 | |
961,140 | + | SMa1704 | 0.53 | +0.4 | |
961,140 | + | SMa1704 | 0.53 | -0.2 | |
961,140 | + | SMa1704 | 0.53 | -0.9 | |
961,141 | - | SMa1704 | 0.53 | -0.6 | |
961,142 | + | SMa1704 | 0.53 | -0.5 | |
961,143 | - | SMa1704 | 0.53 | +0.1 | |
961,484 | - | SMa1704 | 0.81 | -2.0 | |
961,701 | + | +0.0 | |||
961,701 | + | -2.0 | |||
961,701 | + | -1.7 | |||
961,703 | + | +1.4 | |||
961,704 | - | +0.1 | |||
961,705 | + | +0.7 | |||
961,722 | + | +0.4 | |||
961,723 | - | +0.2 | |||
961,723 | - | -0.4 | |||
961,723 | - | -1.3 | |||
961,723 | - | +0.1 | |||
961,778 | - | +1.2 | |||
961,778 | - | +1.7 | |||
961,852 | - | SMa1705 | 0.13 | -0.9 | |
961,852 | - | SMa1705 | 0.13 | -0.0 | |
961,860 | - | SMa1705 | 0.15 | -0.7 | |
961,860 | - | SMa1705 | 0.15 | -0.2 | |
961,903 | + | SMa1705 | 0.25 | +0.7 | |
962,079 | - | SMa1705 | 0.67 | -3.4 | |
962,084 | - | SMa1705 | 0.68 | -2.3 | |
962,150 | + | SMa1705 | 0.84 | -0.9 | |
962,151 | - | SMa1705 | 0.84 | -1.0 | |
962,213 | + | -0.2 | |||
962,213 | + | -0.6 | |||
962,214 | - | +0.4 | |||
962,214 | - | -0.5 | |||
962,229 | + | +0.0 | |||
962,233 | + | +1.9 | |||
962,234 | - | -0.8 | |||
962,234 | - | -0.9 | |||
962,381 | + | +0.7 | |||
962,467 | + | -0.6 | |||
962,467 | + | +1.4 | |||
962,501 | + | -0.2 | |||
962,502 | - | +0.5 | |||
962,502 | - | -0.2 | |||
962,617 | + | +0.2 | |||
962,641 | + | -1.6 | |||
962,642 | - | -0.9 | |||
962,642 | - | -0.2 | |||
962,642 | - | -2.4 | |||
962,678 | + | +0.2 | |||
962,727 | + | +1.8 | |||
963,111 | + | SMa1706 | 0.71 | -1.2 | |
963,137 | - | SMa1706 | 0.77 | -1.2 |
Or see this region's nucleotide sequence