Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1652 and SMa1653 are separated by 2 nucleotides SMa1653 and SMa1654 are separated by 162 nucleotides SMa1654 and SMa1657 are separated by 408 nucleotides SMa1657 and SMa1658 are separated by 4 nucleotides
SMa1652: SMa1652 - hydantoin racemase, at 923,065 to 923,850
SMa1652
SMa1653: SMa1653 - hypothetical protein, at 923,853 to 924,578
SMa1653
SMa1654: SMa1654 - GntR family transcriptional regulator, at 924,741 to 925,439
SMa1654
SMa1657: SMa1657 - hypothetical protein, at 925,848 to 926,255
SMa1657
SMa1658: SMa1658 - hypothetical protein, at 926,260 to 926,625
SMa1658
Position (kb) 924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 923.759 kb on - strand, within SMa1652 at 923.841 kb on - strand at 923.841 kb on - strand at 923.844 kb on + strand at 923.845 kb on - strand at 923.848 kb on + strand at 923.848 kb on + strand at 923.848 kb on + strand at 923.849 kb on - strand at 923.849 kb on - strand at 924.313 kb on + strand, within SMa1653 at 924.321 kb on + strand, within SMa1653 at 924.321 kb on + strand, within SMa1653 at 924.322 kb on - strand, within SMa1653 at 924.322 kb on - strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.358 kb on - strand, within SMa1653 at 924.494 kb on - strand, within SMa1653 at 924.649 kb on - strand at 924.685 kb on + strand at 924.700 kb on + strand at 924.792 kb on + strand at 924.792 kb on + strand at 924.792 kb on + strand at 924.793 kb on - strand at 924.873 kb on + strand, within SMa1654 at 925.013 kb on - strand, within SMa1654 at 925.162 kb on + strand, within SMa1654 at 925.162 kb on + strand, within SMa1654 at 925.188 kb on - strand, within SMa1654 at 925.188 kb on - strand, within SMa1654 at 925.498 kb on + strand at 925.691 kb on + strand at 925.691 kb on + strand at 925.707 kb on + strand at 925.708 kb on - strand at 925.711 kb on + strand at 925.813 kb on - strand at 925.813 kb on - strand at 925.959 kb on + strand, within SMa1657 at 926.004 kb on - strand, within SMa1657 at 926.009 kb on + strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.037 kb on + strand, within SMa1657 at 926.053 kb on + strand, within SMa1657 at 926.136 kb on - strand, within SMa1657 at 926.136 kb on - strand, within SMa1657 at 926.234 kb on - strand at 926.262 kb on - strand at 926.269 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 923,759 - SMa1652 0.88 -0.2 923,841 - +0.5 923,841 - +1.6 923,844 + -0.3 923,845 - -1.0 923,848 + +0.4 923,848 + +1.4 923,848 + +1.2 923,849 - +0.5 923,849 - +0.2 924,313 + SMa1653 0.63 -1.2 924,321 + SMa1653 0.64 +0.0 924,321 + SMa1653 0.64 -0.3 924,322 - SMa1653 0.65 +0.0 924,322 - SMa1653 0.65 -0.7 924,357 + SMa1653 0.69 +1.5 924,357 + SMa1653 0.69 +0.5 924,357 + SMa1653 0.69 -0.6 924,358 - SMa1653 0.70 -1.0 924,494 - SMa1653 0.88 -0.2 924,649 - +2.2 924,685 + -1.4 924,700 + -0.5 924,792 + -1.4 924,792 + +0.9 924,792 + -3.0 924,793 - +0.0 924,873 + SMa1654 0.19 +1.0 925,013 - SMa1654 0.39 +0.6 925,162 + SMa1654 0.60 +0.1 925,162 + SMa1654 0.60 +0.9 925,188 - SMa1654 0.64 +2.4 925,188 - SMa1654 0.64 +0.9 925,498 + +0.6 925,691 + -0.4 925,691 + -0.2 925,707 + -1.9 925,708 - -0.3 925,711 + +0.1 925,813 - -2.3 925,813 - +0.2 925,959 + SMa1657 0.27 +0.1 926,004 - SMa1657 0.38 -0.6 926,009 + SMa1657 0.39 -0.2 926,010 - SMa1657 0.40 -0.6 926,010 - SMa1657 0.40 -0.5 926,010 - SMa1657 0.40 -1.0 926,037 + SMa1657 0.46 +0.5 926,053 + SMa1657 0.50 +1.2 926,136 - SMa1657 0.71 +0.3 926,136 - SMa1657 0.71 -0.3 926,234 - -1.1 926,262 - -0.4 926,269 + +1.3
Or see this region's nucleotide sequence