Strain Fitness in Sinorhizobium meliloti 1021 around SMa1643

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1641 and SMa1643 overlap by 4 nucleotidesSMa1643 and SMa1644 are separated by 97 nucleotidesSMa1644 and SMa5010 are separated by 177 nucleotides SMa1641: SMa1641 - NreB protein, at 914,013 to 915,335 SMa1641 SMa1643: SMa1643 - hypothetical protein, at 915,332 to 915,670 SMa1643 SMa1644: SMa1644 - ABC transporter permease, at 915,768 to 916,487 SMa1644 SMa5010: SMa5010 - hypothetical protein, at 916,665 to 917,003 SMa5010 Position (kb) 915 916Strain fitness (log2 ratio) -2 -1 0 1at 914.412 kb on - strand, within SMa1641at 914.442 kb on + strand, within SMa1641at 914.443 kb on - strand, within SMa1641at 914.443 kb on - strand, within SMa1641at 914.608 kb on - strand, within SMa1641at 914.608 kb on - strand, within SMa1641at 914.638 kb on - strand, within SMa1641at 914.638 kb on - strand, within SMa1641at 914.669 kb on - strand, within SMa1641at 914.908 kb on + strand, within SMa1641at 914.966 kb on + strand, within SMa1641at 915.076 kb on - strand, within SMa1641at 915.565 kb on + strand, within SMa1643at 915.587 kb on - strand, within SMa1643at 915.726 kb on - strandat 915.804 kb on + strandat 915.805 kb on - strandat 915.825 kb on - strandat 915.825 kb on - strandat 915.945 kb on + strand, within SMa1644at 915.945 kb on + strand, within SMa1644at 915.946 kb on - strand, within SMa1644at 916.034 kb on - strand, within SMa1644at 916.064 kb on + strand, within SMa1644at 916.065 kb on - strand, within SMa1644at 916.065 kb on - strand, within SMa1644at 916.451 kb on - strandat 916.453 kb on + strandat 916.454 kb on - strandat 916.454 kb on - strandat 916.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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914,412 - SMa1641 0.30 -2.0
914,442 + SMa1641 0.32 -1.4
914,443 - SMa1641 0.33 -0.2
914,443 - SMa1641 0.33 -0.5
914,608 - SMa1641 0.45 -2.4
914,608 - SMa1641 0.45 -0.2
914,638 - SMa1641 0.47 -0.6
914,638 - SMa1641 0.47 -0.5
914,669 - SMa1641 0.50 -0.5
914,908 + SMa1641 0.68 +0.6
914,966 + SMa1641 0.72 -0.1
915,076 - SMa1641 0.80 +0.2
915,565 + SMa1643 0.69 +1.0
915,587 - SMa1643 0.75 +0.1
915,726 - +0.5
915,804 + +1.3
915,805 - +0.5
915,825 - -1.2
915,825 - +1.7
915,945 + SMa1644 0.25 +0.1
915,945 + SMa1644 0.25 +0.5
915,946 - SMa1644 0.25 +0.2
916,034 - SMa1644 0.37 +0.2
916,064 + SMa1644 0.41 -0.2
916,065 - SMa1644 0.41 +0.6
916,065 - SMa1644 0.41 -2.2
916,451 - -0.6
916,453 + -1.5
916,454 - +0.1
916,454 - +0.2
916,571 - +0.6

Or see this region's nucleotide sequence