Strain Fitness in Sinorhizobium meliloti 1021 around SMa1639

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1637 and SMa1639 are separated by 598 nucleotidesSMa1639 and SMa1641 are separated by 12 nucleotides SMa1637: SMa1637 - transposase TRm17b, at 912,620 to 913,126 SMa1637 SMa1639: SMa1639 - hypothetical protein, at 913,725 to 914,000 SMa1639 SMa1641: SMa1641 - NreB protein, at 914,013 to 915,335 SMa1641 Position (kb) 913 914 915Strain fitness (log2 ratio) -2 -1 0 1 2at 913.578 kb on + strandat 913.579 kb on - strandat 913.641 kb on + strandat 913.642 kb on - strandat 913.687 kb on + strandat 913.688 kb on - strandat 913.724 kb on + strandat 913.966 kb on + strand, within SMa1639at 913.967 kb on - strand, within SMa1639at 914.282 kb on - strand, within SMa1641at 914.316 kb on + strand, within SMa1641at 914.317 kb on - strand, within SMa1641at 914.317 kb on - strand, within SMa1641at 914.317 kb on - strand, within SMa1641at 914.317 kb on - strand, within SMa1641at 914.412 kb on - strand, within SMa1641at 914.442 kb on + strand, within SMa1641at 914.443 kb on - strand, within SMa1641at 914.443 kb on - strand, within SMa1641at 914.608 kb on - strand, within SMa1641at 914.608 kb on - strand, within SMa1641at 914.638 kb on - strand, within SMa1641at 914.638 kb on - strand, within SMa1641at 914.669 kb on - strand, within SMa1641at 914.908 kb on + strand, within SMa1641at 914.966 kb on + strand, within SMa1641

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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913,578 + -0.6
913,579 - +0.1
913,641 + +0.1
913,642 - +0.5
913,687 + -2.4
913,688 - +0.3
913,724 + +1.2
913,966 + SMa1639 0.87 +2.2
913,967 - SMa1639 0.88 -1.2
914,282 - SMa1641 0.20 +0.0
914,316 + SMa1641 0.23 +0.5
914,317 - SMa1641 0.23 -0.3
914,317 - SMa1641 0.23 -0.2
914,317 - SMa1641 0.23 -0.1
914,317 - SMa1641 0.23 +0.0
914,412 - SMa1641 0.30 -2.0
914,442 + SMa1641 0.32 -1.4
914,443 - SMa1641 0.33 -0.2
914,443 - SMa1641 0.33 -0.5
914,608 - SMa1641 0.45 -2.4
914,608 - SMa1641 0.45 -0.2
914,638 - SMa1641 0.47 -0.6
914,638 - SMa1641 0.47 -0.5
914,669 - SMa1641 0.50 -0.5
914,908 + SMa1641 0.68 +0.6
914,966 + SMa1641 0.72 -0.1

Or see this region's nucleotide sequence